Experiment: AgroPhage_F10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3371 and Atu3372 are separated by 233 nucleotides Atu3372 and Atu3374 are separated by 517 nucleotides
Atu3371: Atu3371 - sugar ABC transporter ATPase, at 411,714 to 413,255
Atu3371
Atu3372: Atu3372 - sugar ABC transporter substrate-binding protein, at 413,489 to 414,418
Atu3372
Atu3374: Atu3374 - amidohydrolase, at 414,936 to 416,378
Atu3374
Position (kb) 413
414
415 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 412.526 kb on + strand, within Atu3371 at 412.579 kb on + strand, within Atu3371 at 412.677 kb on - strand, within Atu3371 at 412.715 kb on + strand, within Atu3371 at 412.754 kb on + strand, within Atu3371 at 412.847 kb on - strand, within Atu3371 at 412.921 kb on - strand, within Atu3371 at 412.932 kb on + strand, within Atu3371 at 413.107 kb on + strand at 413.113 kb on + strand at 413.119 kb on + strand at 413.132 kb on - strand at 413.142 kb on - strand at 413.253 kb on - strand at 413.312 kb on + strand at 413.312 kb on + strand at 413.335 kb on + strand at 413.367 kb on - strand at 413.396 kb on - strand at 413.604 kb on + strand, within Atu3372 at 413.604 kb on + strand, within Atu3372 at 413.604 kb on + strand, within Atu3372 at 413.604 kb on + strand, within Atu3372 at 413.604 kb on + strand, within Atu3372 at 413.612 kb on - strand, within Atu3372 at 413.612 kb on - strand, within Atu3372 at 413.612 kb on - strand, within Atu3372 at 413.612 kb on - strand, within Atu3372 at 413.614 kb on + strand, within Atu3372 at 413.622 kb on - strand, within Atu3372 at 413.622 kb on - strand, within Atu3372 at 413.622 kb on - strand, within Atu3372 at 413.645 kb on - strand, within Atu3372 at 413.678 kb on - strand, within Atu3372 at 413.719 kb on - strand, within Atu3372 at 413.807 kb on - strand, within Atu3372 at 413.960 kb on + strand, within Atu3372 at 413.970 kb on + strand, within Atu3372 at 414.096 kb on + strand, within Atu3372 at 414.096 kb on + strand, within Atu3372 at 414.104 kb on - strand, within Atu3372 at 414.165 kb on + strand, within Atu3372 at 414.236 kb on + strand, within Atu3372 at 414.239 kb on - strand, within Atu3372 at 414.241 kb on - strand, within Atu3372 at 414.244 kb on - strand, within Atu3372 at 414.246 kb on + strand, within Atu3372 at 414.261 kb on + strand, within Atu3372 at 414.277 kb on - strand, within Atu3372 at 414.297 kb on + strand, within Atu3372 at 414.320 kb on - strand, within Atu3372 at 414.372 kb on - strand at 414.387 kb on + strand at 414.447 kb on - strand at 414.575 kb on - strand at 414.677 kb on - strand at 414.712 kb on + strand at 414.712 kb on + strand at 414.797 kb on + strand at 414.818 kb on - strand at 414.939 kb on - strand at 414.949 kb on - strand at 414.985 kb on - strand at 415.069 kb on + strand at 415.114 kb on + strand, within Atu3374 at 415.122 kb on - strand, within Atu3374 at 415.122 kb on - strand, within Atu3374 at 415.122 kb on - strand, within Atu3374 at 415.122 kb on - strand, within Atu3374 at 415.122 kb on - strand, within Atu3374 at 415.122 kb on - strand, within Atu3374 at 415.122 kb on - strand, within Atu3374 at 415.228 kb on - strand, within Atu3374 at 415.318 kb on + strand, within Atu3374
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_F10 remove 412,526 + Atu3371 0.53 -0.7 412,579 + Atu3371 0.56 +0.3 412,677 - Atu3371 0.62 +0.1 412,715 + Atu3371 0.65 -1.9 412,754 + Atu3371 0.67 -0.3 412,847 - Atu3371 0.73 +0.5 412,921 - Atu3371 0.78 -0.2 412,932 + Atu3371 0.79 +0.1 413,107 + -1.1 413,113 + -1.4 413,119 + +1.2 413,132 - +0.8 413,142 - -0.4 413,253 - -1.1 413,312 + -1.4 413,312 + +0.9 413,335 + +0.1 413,367 - +0.3 413,396 - +3.8 413,604 + Atu3372 0.12 +0.3 413,604 + Atu3372 0.12 +0.8 413,604 + Atu3372 0.12 +0.2 413,604 + Atu3372 0.12 -1.0 413,604 + Atu3372 0.12 -0.8 413,612 - Atu3372 0.13 -0.9 413,612 - Atu3372 0.13 -0.1 413,612 - Atu3372 0.13 +0.7 413,612 - Atu3372 0.13 +0.4 413,614 + Atu3372 0.13 -0.2 413,622 - Atu3372 0.14 -1.0 413,622 - Atu3372 0.14 +0.6 413,622 - Atu3372 0.14 +0.3 413,645 - Atu3372 0.17 -1.2 413,678 - Atu3372 0.20 -0.7 413,719 - Atu3372 0.25 -2.0 413,807 - Atu3372 0.34 +0.7 413,960 + Atu3372 0.51 -0.7 413,970 + Atu3372 0.52 +1.2 414,096 + Atu3372 0.65 -0.8 414,096 + Atu3372 0.65 +0.1 414,104 - Atu3372 0.66 -0.8 414,165 + Atu3372 0.73 +0.3 414,236 + Atu3372 0.80 +1.3 414,239 - Atu3372 0.81 -0.3 414,241 - Atu3372 0.81 +0.5 414,244 - Atu3372 0.81 -1.2 414,246 + Atu3372 0.81 -1.5 414,261 + Atu3372 0.83 +0.3 414,277 - Atu3372 0.85 +0.6 414,297 + Atu3372 0.87 -1.0 414,320 - Atu3372 0.89 -1.5 414,372 - -0.0 414,387 + -0.7 414,447 - -1.8 414,575 - +1.1 414,677 - +0.2 414,712 + +0.0 414,712 + +0.7 414,797 + -1.6 414,818 - +0.3 414,939 - +0.2 414,949 - +1.4 414,985 - +0.0 415,069 + -0.5 415,114 + Atu3374 0.12 -0.7 415,122 - Atu3374 0.13 +0.3 415,122 - Atu3374 0.13 +0.0 415,122 - Atu3374 0.13 -0.7 415,122 - Atu3374 0.13 +0.2 415,122 - Atu3374 0.13 -0.3 415,122 - Atu3374 0.13 +0.1 415,122 - Atu3374 0.13 +0.1 415,228 - Atu3374 0.20 -1.7 415,318 + Atu3374 0.26 -0.1
Or see this region's nucleotide sequence