Experiment: AgroPhage_F10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3164 and Atu3165 are separated by 259 nucleotides Atu3165 and Atu3166 are separated by 379 nucleotides
Atu3164: Atu3164 - sorbitol dehydrogenase, at 173,174 to 173,944
Atu3164
Atu3165: Atu3165 - sorbitol/mannitol ABC transporter substrate-binding protein, at 174,204 to 175,457
Atu3165
Atu3166: Atu3166 - fructokinase, at 175,837 to 176,826
Atu3166
Position (kb) 174
175
176 Strain fitness (log2 ratio) -2
-1
0
1
2 at 173.231 kb on + strand at 173.251 kb on - strand, within Atu3164 at 173.301 kb on + strand, within Atu3164 at 173.309 kb on - strand, within Atu3164 at 173.396 kb on + strand, within Atu3164 at 173.401 kb on + strand, within Atu3164 at 173.574 kb on + strand, within Atu3164 at 173.608 kb on - strand, within Atu3164 at 173.747 kb on + strand, within Atu3164 at 173.775 kb on - strand, within Atu3164 at 173.776 kb on - strand, within Atu3164 at 173.793 kb on + strand, within Atu3164 at 173.925 kb on + strand at 173.933 kb on - strand at 173.941 kb on - strand at 174.021 kb on - strand at 174.023 kb on - strand at 174.023 kb on - strand at 174.117 kb on + strand at 174.159 kb on - strand at 174.225 kb on + strand at 174.234 kb on + strand at 174.367 kb on + strand, within Atu3165 at 174.375 kb on - strand, within Atu3165 at 174.375 kb on - strand, within Atu3165 at 174.401 kb on + strand, within Atu3165 at 174.503 kb on - strand, within Atu3165 at 174.521 kb on + strand, within Atu3165 at 174.540 kb on + strand, within Atu3165 at 174.587 kb on + strand, within Atu3165 at 174.605 kb on - strand, within Atu3165 at 174.620 kb on - strand, within Atu3165 at 174.657 kb on - strand, within Atu3165 at 174.696 kb on - strand, within Atu3165 at 174.770 kb on - strand, within Atu3165 at 174.868 kb on + strand, within Atu3165 at 174.883 kb on + strand, within Atu3165 at 174.945 kb on + strand, within Atu3165 at 174.974 kb on + strand, within Atu3165 at 175.077 kb on + strand, within Atu3165 at 175.085 kb on - strand, within Atu3165 at 175.091 kb on + strand, within Atu3165 at 175.122 kb on - strand, within Atu3165 at 175.122 kb on - strand, within Atu3165 at 175.127 kb on - strand, within Atu3165 at 175.129 kb on + strand, within Atu3165 at 175.129 kb on + strand, within Atu3165 at 175.129 kb on + strand, within Atu3165 at 175.129 kb on + strand, within Atu3165 at 175.129 kb on + strand, within Atu3165 at 175.137 kb on - strand, within Atu3165 at 175.137 kb on - strand, within Atu3165 at 175.137 kb on - strand, within Atu3165 at 175.137 kb on - strand, within Atu3165 at 175.230 kb on - strand, within Atu3165 at 175.273 kb on + strand, within Atu3165 at 175.281 kb on - strand, within Atu3165 at 175.434 kb on + strand at 175.459 kb on - strand at 175.459 kb on - strand at 175.469 kb on + strand at 175.477 kb on - strand at 175.477 kb on - strand at 175.506 kb on + strand at 175.828 kb on - strand at 175.828 kb on - strand at 175.830 kb on - strand at 175.833 kb on + strand at 175.855 kb on - strand at 175.908 kb on + strand at 176.072 kb on - strand, within Atu3166 at 176.107 kb on + strand, within Atu3166 at 176.271 kb on - strand, within Atu3166 at 176.356 kb on - strand, within Atu3166 at 176.365 kb on - strand, within Atu3166 at 176.365 kb on - strand, within Atu3166 at 176.380 kb on + strand, within Atu3166 at 176.380 kb on + strand, within Atu3166 at 176.399 kb on - strand, within Atu3166 at 176.420 kb on - strand, within Atu3166
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_F10 remove 173,231 + +1.4 173,251 - Atu3164 0.10 -0.5 173,301 + Atu3164 0.16 -1.3 173,309 - Atu3164 0.18 -0.5 173,396 + Atu3164 0.29 -0.2 173,401 + Atu3164 0.29 -0.2 173,574 + Atu3164 0.52 -0.0 173,608 - Atu3164 0.56 -1.1 173,747 + Atu3164 0.74 -0.4 173,775 - Atu3164 0.78 +0.3 173,776 - Atu3164 0.78 -0.9 173,793 + Atu3164 0.80 +0.9 173,925 + -0.5 173,933 - +0.1 173,941 - -0.5 174,021 - -0.2 174,023 - +1.2 174,023 - +0.3 174,117 + +1.0 174,159 - +1.1 174,225 + -1.6 174,234 + +0.4 174,367 + Atu3165 0.13 -0.1 174,375 - Atu3165 0.14 -0.3 174,375 - Atu3165 0.14 +0.2 174,401 + Atu3165 0.16 -0.6 174,503 - Atu3165 0.24 +1.8 174,521 + Atu3165 0.25 +1.1 174,540 + Atu3165 0.27 -1.0 174,587 + Atu3165 0.31 +0.9 174,605 - Atu3165 0.32 -0.4 174,620 - Atu3165 0.33 +0.6 174,657 - Atu3165 0.36 -0.2 174,696 - Atu3165 0.39 +0.3 174,770 - Atu3165 0.45 -1.9 174,868 + Atu3165 0.53 +0.3 174,883 + Atu3165 0.54 -1.0 174,945 + Atu3165 0.59 -1.4 174,974 + Atu3165 0.61 -0.6 175,077 + Atu3165 0.70 +1.2 175,085 - Atu3165 0.70 -1.9 175,091 + Atu3165 0.71 -1.3 175,122 - Atu3165 0.73 -0.0 175,122 - Atu3165 0.73 -0.4 175,127 - Atu3165 0.74 -1.1 175,129 + Atu3165 0.74 +1.1 175,129 + Atu3165 0.74 +0.1 175,129 + Atu3165 0.74 -1.5 175,129 + Atu3165 0.74 +0.6 175,129 + Atu3165 0.74 -0.2 175,137 - Atu3165 0.74 -1.2 175,137 - Atu3165 0.74 -1.0 175,137 - Atu3165 0.74 -1.2 175,137 - Atu3165 0.74 -0.0 175,230 - Atu3165 0.82 +0.6 175,273 + Atu3165 0.85 +1.3 175,281 - Atu3165 0.86 +0.4 175,434 + -0.4 175,459 - -0.5 175,459 - +0.2 175,469 + -1.7 175,477 - +0.1 175,477 - -0.3 175,506 + +0.1 175,828 - +0.2 175,828 - -0.1 175,830 - -1.3 175,833 + -0.4 175,855 - +1.5 175,908 + +0.4 176,072 - Atu3166 0.24 -2.7 176,107 + Atu3166 0.27 -0.9 176,271 - Atu3166 0.44 -1.5 176,356 - Atu3166 0.52 +0.8 176,365 - Atu3166 0.53 -0.7 176,365 - Atu3166 0.53 -0.2 176,380 + Atu3166 0.55 -1.6 176,380 + Atu3166 0.55 -1.7 176,399 - Atu3166 0.57 +2.4 176,420 - Atu3166 0.59 -0.3
Or see this region's nucleotide sequence