Strain Fitness in Agrobacterium fabrum C58 around Atu1029

Experiment: AgroPhage_F10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1028 and Atu1029 are separated by 392 nucleotidesAtu1029 and Atu1030 are separated by 132 nucleotides Atu1028: Atu1028 - hypothetical protein, at 1,021,177 to 1,021,746 Atu1028 Atu1029: Atu1029 - DNA-directed RNA polymerase omega subunit, at 1,022,139 to 1,022,528 Atu1029 Atu1030: Atu1030 - GTP pyrophosphohydrolase/synthetase, RelA/SpoT family, at 1,022,661 to 1,024,895 Atu1030 Position (kb) 1022 1023Strain fitness (log2 ratio) -1 0 1 2 3 4at 1021.164 kb on + strandat 1021.399 kb on - strand, within Atu1028at 1021.428 kb on + strand, within Atu1028at 1021.865 kb on + strandat 1021.886 kb on - strandat 1022.533 kb on + strandat 1022.570 kb on + strandat 1022.593 kb on + strandat 1022.631 kb on - strandat 1022.742 kb on - strandat 1022.792 kb on + strandat 1023.286 kb on + strand, within Atu1030at 1023.359 kb on + strand, within Atu1030

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Per-strain Table

Position Strand Gene LocusTag Fraction AgroPhage_F10
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1,021,164 + -0.6
1,021,399 - Atu1028 0.39 +2.5
1,021,428 + Atu1028 0.44 +4.5
1,021,865 + -0.1
1,021,886 - -0.4
1,022,533 + -0.9
1,022,570 + -0.6
1,022,593 + +0.1
1,022,631 - -0.9
1,022,742 - +0.9
1,022,792 + +0.6
1,023,286 + Atu1030 0.28 -0.9
1,023,359 + Atu1030 0.31 +0.2

Or see this region's nucleotide sequence