Experiment: AgroPhage_F10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0902 and Atu0903 are separated by 84 nucleotides Atu0903 and Atu0904 are separated by 278 nucleotides Atu0904 and Atu0905 are separated by 122 nucleotides
Atu0902: Atu0902 - hypothetical protein, at 893,493 to 894,653
Atu0902
Atu0903: Atu0903 - hypothetical protein, at 894,738 to 895,598
Atu0903
Atu0904: Atu0904 - hypothetical protein, at 895,877 to 896,287
Atu0904
Atu0905: Atu0905 - dnaK suppressor protein, at 896,410 to 896,730
Atu0905
Position (kb) 894
895
896 Strain fitness (log2 ratio) -2
-1
0
1
2 at 893.743 kb on + strand, within Atu0902 at 893.888 kb on + strand, within Atu0902 at 893.890 kb on + strand, within Atu0902 at 893.913 kb on - strand, within Atu0902 at 893.915 kb on + strand, within Atu0902 at 893.966 kb on + strand, within Atu0902 at 894.004 kb on + strand, within Atu0902 at 894.009 kb on + strand, within Atu0902 at 894.026 kb on + strand, within Atu0902 at 894.048 kb on + strand, within Atu0902 at 894.056 kb on - strand, within Atu0902 at 894.248 kb on + strand, within Atu0902 at 894.248 kb on + strand, within Atu0902 at 894.248 kb on + strand, within Atu0902 at 894.256 kb on - strand, within Atu0902 at 894.256 kb on - strand, within Atu0902 at 894.316 kb on + strand, within Atu0902 at 894.324 kb on - strand, within Atu0902 at 894.335 kb on + strand, within Atu0902 at 894.335 kb on + strand, within Atu0902 at 894.350 kb on - strand, within Atu0902 at 894.544 kb on - strand at 894.544 kb on - strand at 894.595 kb on + strand at 894.600 kb on + strand at 894.603 kb on - strand at 894.662 kb on + strand at 894.669 kb on - strand at 894.730 kb on + strand at 894.757 kb on - strand at 894.771 kb on - strand at 894.892 kb on + strand, within Atu0903 at 894.903 kb on - strand, within Atu0903 at 894.909 kb on + strand, within Atu0903 at 894.952 kb on - strand, within Atu0903 at 895.094 kb on - strand, within Atu0903 at 895.101 kb on + strand, within Atu0903 at 895.109 kb on - strand, within Atu0903 at 895.125 kb on + strand, within Atu0903 at 895.133 kb on - strand, within Atu0903 at 895.142 kb on + strand, within Atu0903 at 895.150 kb on - strand, within Atu0903 at 895.228 kb on - strand, within Atu0903 at 895.236 kb on - strand, within Atu0903 at 895.376 kb on - strand, within Atu0903 at 895.470 kb on + strand, within Atu0903 at 895.550 kb on + strand at 895.554 kb on + strand at 895.674 kb on + strand at 895.807 kb on - strand at 896.083 kb on + strand, within Atu0904 at 896.083 kb on + strand, within Atu0904 at 896.091 kb on - strand, within Atu0904 at 896.202 kb on + strand, within Atu0904 at 896.210 kb on - strand, within Atu0904 at 896.458 kb on + strand, within Atu0905 at 896.515 kb on + strand, within Atu0905 at 896.569 kb on - strand, within Atu0905 at 896.579 kb on + strand, within Atu0905
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_F10 remove 893,743 + Atu0902 0.22 +1.4 893,888 + Atu0902 0.34 +0.9 893,890 + Atu0902 0.34 -0.6 893,913 - Atu0902 0.36 +2.7 893,915 + Atu0902 0.36 -1.0 893,966 + Atu0902 0.41 -0.5 894,004 + Atu0902 0.44 -0.2 894,009 + Atu0902 0.44 -0.6 894,026 + Atu0902 0.46 -0.7 894,048 + Atu0902 0.48 -0.7 894,056 - Atu0902 0.48 +0.1 894,248 + Atu0902 0.65 +0.1 894,248 + Atu0902 0.65 -0.7 894,248 + Atu0902 0.65 +0.3 894,256 - Atu0902 0.66 +1.3 894,256 - Atu0902 0.66 -1.0 894,316 + Atu0902 0.71 -0.1 894,324 - Atu0902 0.72 +0.3 894,335 + Atu0902 0.73 -0.7 894,335 + Atu0902 0.73 -0.5 894,350 - Atu0902 0.74 -0.3 894,544 - -0.0 894,544 - +0.0 894,595 + -0.2 894,600 + -0.8 894,603 - -0.8 894,662 + +0.9 894,669 - +2.0 894,730 + -0.2 894,757 - +0.5 894,771 - -0.3 894,892 + Atu0903 0.18 +0.5 894,903 - Atu0903 0.19 -1.9 894,909 + Atu0903 0.20 +2.6 894,952 - Atu0903 0.25 +1.1 895,094 - Atu0903 0.41 -0.1 895,101 + Atu0903 0.42 +1.9 895,109 - Atu0903 0.43 +0.5 895,125 + Atu0903 0.45 -0.0 895,133 - Atu0903 0.46 -0.4 895,142 + Atu0903 0.47 -1.3 895,150 - Atu0903 0.48 -1.0 895,228 - Atu0903 0.57 -1.3 895,236 - Atu0903 0.58 +0.1 895,376 - Atu0903 0.74 +0.2 895,470 + Atu0903 0.85 -0.5 895,550 + -0.7 895,554 + -0.5 895,674 + +0.6 895,807 - -0.4 896,083 + Atu0904 0.50 +0.4 896,083 + Atu0904 0.50 -0.8 896,091 - Atu0904 0.52 +0.1 896,202 + Atu0904 0.79 +0.6 896,210 - Atu0904 0.81 +1.2 896,458 + Atu0905 0.15 +0.3 896,515 + Atu0905 0.33 -0.7 896,569 - Atu0905 0.50 -0.8 896,579 + Atu0905 0.53 -0.0
Or see this region's nucleotide sequence