Experiment: AgroPhage_F10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0818 and Atu0819 are separated by 225 nucleotides Atu0819 and Atu0820 are separated by 245 nucleotides
Atu0818: Atu0818 - phosphoadenosine phosphosulfate reductase, at 816,493 to 817,254
Atu0818
Atu0819: Atu0819 - hypothetical protein, at 817,480 to 817,920
Atu0819
Atu0820: Atu0820 - ABC transporter, substrate binding protein (sulfate), at 818,166 to 819,191
Atu0820
Position (kb) 817
818 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 816.591 kb on - strand, within Atu0818 at 816.633 kb on + strand, within Atu0818 at 816.709 kb on + strand, within Atu0818 at 816.712 kb on - strand, within Atu0818 at 816.712 kb on - strand, within Atu0818 at 816.717 kb on - strand, within Atu0818 at 816.752 kb on + strand, within Atu0818 at 816.752 kb on + strand, within Atu0818 at 816.764 kb on + strand, within Atu0818 at 816.764 kb on + strand, within Atu0818 at 816.842 kb on - strand, within Atu0818 at 816.844 kb on + strand, within Atu0818 at 816.852 kb on - strand, within Atu0818 at 816.852 kb on - strand, within Atu0818 at 816.870 kb on + strand, within Atu0818 at 816.912 kb on + strand, within Atu0818 at 816.926 kb on + strand, within Atu0818 at 817.108 kb on - strand, within Atu0818 at 817.132 kb on + strand, within Atu0818 at 817.132 kb on + strand, within Atu0818 at 817.140 kb on - strand, within Atu0818 at 817.185 kb on + strand at 817.200 kb on + strand at 817.203 kb on - strand at 817.287 kb on + strand at 817.340 kb on - strand at 817.535 kb on - strand, within Atu0819 at 817.701 kb on - strand, within Atu0819 at 817.711 kb on + strand, within Atu0819 at 817.711 kb on + strand, within Atu0819 at 817.763 kb on + strand, within Atu0819 at 817.773 kb on + strand, within Atu0819 at 817.791 kb on - strand, within Atu0819 at 817.835 kb on - strand, within Atu0819 at 817.999 kb on - strand at 818.001 kb on + strand at 818.016 kb on - strand at 818.016 kb on - strand at 818.161 kb on - strand at 818.206 kb on + strand at 818.266 kb on - strand at 818.281 kb on + strand, within Atu0820 at 818.321 kb on + strand, within Atu0820 at 818.339 kb on - strand, within Atu0820 at 818.341 kb on + strand, within Atu0820 at 818.348 kb on - strand, within Atu0820 at 818.407 kb on + strand, within Atu0820 at 818.486 kb on + strand, within Atu0820 at 818.560 kb on + strand, within Atu0820 at 818.569 kb on - strand, within Atu0820 at 818.569 kb on - strand, within Atu0820 at 818.569 kb on - strand, within Atu0820 at 818.625 kb on - strand, within Atu0820 at 818.658 kb on - strand, within Atu0820 at 818.664 kb on + strand, within Atu0820 at 818.668 kb on + strand, within Atu0820 at 818.687 kb on + strand, within Atu0820 at 818.687 kb on + strand, within Atu0820 at 818.687 kb on + strand, within Atu0820 at 818.695 kb on - strand, within Atu0820 at 818.695 kb on - strand, within Atu0820 at 818.695 kb on - strand, within Atu0820 at 818.695 kb on - strand, within Atu0820 at 818.708 kb on + strand, within Atu0820 at 818.714 kb on + strand, within Atu0820 at 818.716 kb on - strand, within Atu0820 at 818.716 kb on - strand, within Atu0820 at 818.740 kb on - strand, within Atu0820 at 818.782 kb on + strand, within Atu0820 at 818.792 kb on + strand, within Atu0820 at 818.792 kb on + strand, within Atu0820 at 818.800 kb on - strand, within Atu0820
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_F10 remove 816,591 - Atu0818 0.13 -3.2 816,633 + Atu0818 0.18 -0.0 816,709 + Atu0818 0.28 -0.1 816,712 - Atu0818 0.29 +0.5 816,712 - Atu0818 0.29 -1.6 816,717 - Atu0818 0.29 -3.3 816,752 + Atu0818 0.34 -0.6 816,752 + Atu0818 0.34 -0.5 816,764 + Atu0818 0.36 -0.1 816,764 + Atu0818 0.36 -3.0 816,842 - Atu0818 0.46 +1.4 816,844 + Atu0818 0.46 +0.1 816,852 - Atu0818 0.47 +1.2 816,852 - Atu0818 0.47 -0.6 816,870 + Atu0818 0.49 -1.4 816,912 + Atu0818 0.55 +0.2 816,926 + Atu0818 0.57 -1.4 817,108 - Atu0818 0.81 +0.7 817,132 + Atu0818 0.84 -0.9 817,132 + Atu0818 0.84 -0.1 817,140 - Atu0818 0.85 +0.5 817,185 + -1.0 817,200 + +0.1 817,203 - -0.3 817,287 + -0.1 817,340 - +0.2 817,535 - Atu0819 0.12 -0.3 817,701 - Atu0819 0.50 -0.9 817,711 + Atu0819 0.52 -0.9 817,711 + Atu0819 0.52 -0.4 817,763 + Atu0819 0.64 +0.4 817,773 + Atu0819 0.66 -1.4 817,791 - Atu0819 0.71 +0.2 817,835 - Atu0819 0.80 +1.0 817,999 - -0.7 818,001 + +0.4 818,016 - +2.1 818,016 - -0.3 818,161 - -1.2 818,206 + -0.2 818,266 - -0.1 818,281 + Atu0820 0.11 +0.8 818,321 + Atu0820 0.15 -1.1 818,339 - Atu0820 0.17 +0.5 818,341 + Atu0820 0.17 -2.4 818,348 - Atu0820 0.18 +0.0 818,407 + Atu0820 0.23 +0.8 818,486 + Atu0820 0.31 -0.7 818,560 + Atu0820 0.38 +0.9 818,569 - Atu0820 0.39 +0.3 818,569 - Atu0820 0.39 +0.4 818,569 - Atu0820 0.39 +0.8 818,625 - Atu0820 0.45 -0.3 818,658 - Atu0820 0.48 -1.3 818,664 + Atu0820 0.49 +0.4 818,668 + Atu0820 0.49 -0.8 818,687 + Atu0820 0.51 -0.5 818,687 + Atu0820 0.51 -1.0 818,687 + Atu0820 0.51 +0.0 818,695 - Atu0820 0.52 -0.5 818,695 - Atu0820 0.52 +0.5 818,695 - Atu0820 0.52 -1.5 818,695 - Atu0820 0.52 -0.7 818,708 + Atu0820 0.53 -1.3 818,714 + Atu0820 0.53 -1.6 818,716 - Atu0820 0.54 +0.6 818,716 - Atu0820 0.54 +0.9 818,740 - Atu0820 0.56 +0.6 818,782 + Atu0820 0.60 -0.6 818,792 + Atu0820 0.61 +1.0 818,792 + Atu0820 0.61 +0.1 818,800 - Atu0820 0.62 +0.1
Or see this region's nucleotide sequence