Experiment: AgroPhage_F10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0804 and Atu0805 are separated by 32 nucleotides Atu0805 and Atu0806 are separated by 254 nucleotides Atu0806 and Atu0807 are separated by 178 nucleotides
Atu0804: Atu0804 - proton/glutamate transport protein, at 805,152 to 806,516
Atu0804
Atu0805: Atu0805 - hypothetical protein, at 806,549 to 807,022
Atu0805
Atu0806: Atu0806 - hypothetical protein, at 807,277 to 808,197
Atu0806
Atu0807: Atu0807 - metallo-beta-lactamase superfamily protein, at 808,376 to 809,284
Atu0807
Position (kb) 807
808
809 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 806.292 kb on + strand, within Atu0804 at 806.433 kb on - strand at 806.702 kb on + strand, within Atu0805 at 806.702 kb on + strand, within Atu0805 at 806.766 kb on + strand, within Atu0805 at 806.774 kb on - strand, within Atu0805 at 806.819 kb on + strand, within Atu0805 at 806.827 kb on - strand, within Atu0805 at 806.995 kb on + strand at 807.052 kb on + strand at 807.108 kb on + strand at 807.139 kb on + strand at 807.373 kb on + strand, within Atu0806 at 807.379 kb on - strand, within Atu0806 at 807.406 kb on - strand, within Atu0806 at 807.425 kb on - strand, within Atu0806 at 807.442 kb on - strand, within Atu0806 at 807.442 kb on - strand, within Atu0806 at 807.447 kb on - strand, within Atu0806 at 807.480 kb on + strand, within Atu0806 at 807.480 kb on + strand, within Atu0806 at 807.480 kb on + strand, within Atu0806 at 807.480 kb on + strand, within Atu0806 at 807.480 kb on + strand, within Atu0806 at 807.528 kb on + strand, within Atu0806 at 807.541 kb on - strand, within Atu0806 at 807.541 kb on - strand, within Atu0806 at 807.571 kb on + strand, within Atu0806 at 807.639 kb on + strand, within Atu0806 at 807.639 kb on + strand, within Atu0806 at 807.724 kb on - strand, within Atu0806 at 807.760 kb on - strand, within Atu0806 at 807.856 kb on - strand, within Atu0806 at 807.873 kb on + strand, within Atu0806 at 807.875 kb on + strand, within Atu0806 at 807.881 kb on - strand, within Atu0806 at 807.881 kb on - strand, within Atu0806 at 807.915 kb on + strand, within Atu0806 at 807.918 kb on - strand, within Atu0806 at 807.985 kb on + strand, within Atu0806 at 808.020 kb on + strand, within Atu0806 at 808.061 kb on - strand, within Atu0806 at 808.146 kb on + strand at 808.180 kb on + strand at 808.231 kb on - strand at 808.240 kb on + strand at 808.324 kb on + strand at 808.329 kb on + strand at 808.332 kb on - strand at 808.354 kb on - strand at 808.462 kb on + strand at 808.495 kb on + strand, within Atu0807 at 808.559 kb on + strand, within Atu0807 at 808.630 kb on - strand, within Atu0807 at 808.680 kb on + strand, within Atu0807 at 808.740 kb on + strand, within Atu0807 at 808.747 kb on - strand, within Atu0807 at 808.829 kb on - strand, within Atu0807 at 808.879 kb on + strand, within Atu0807 at 808.930 kb on - strand, within Atu0807 at 809.035 kb on + strand, within Atu0807 at 809.051 kb on + strand, within Atu0807 at 809.053 kb on - strand, within Atu0807 at 809.059 kb on - strand, within Atu0807 at 809.069 kb on + strand, within Atu0807 at 809.070 kb on - strand, within Atu0807
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_F10 remove 806,292 + Atu0804 0.84 -0.7 806,433 - -1.2 806,702 + Atu0805 0.32 +0.4 806,702 + Atu0805 0.32 +0.8 806,766 + Atu0805 0.46 -0.9 806,774 - Atu0805 0.47 -0.1 806,819 + Atu0805 0.57 -0.5 806,827 - Atu0805 0.59 +0.5 806,995 + -0.9 807,052 + +0.1 807,108 + -0.5 807,139 + +1.4 807,373 + Atu0806 0.10 +0.7 807,379 - Atu0806 0.11 -1.6 807,406 - Atu0806 0.14 +0.1 807,425 - Atu0806 0.16 +1.0 807,442 - Atu0806 0.18 +1.6 807,442 - Atu0806 0.18 +1.5 807,447 - Atu0806 0.18 -0.5 807,480 + Atu0806 0.22 +1.0 807,480 + Atu0806 0.22 -0.7 807,480 + Atu0806 0.22 +0.0 807,480 + Atu0806 0.22 +0.4 807,480 + Atu0806 0.22 +1.7 807,528 + Atu0806 0.27 +3.7 807,541 - Atu0806 0.29 +0.7 807,541 - Atu0806 0.29 +0.6 807,571 + Atu0806 0.32 -0.6 807,639 + Atu0806 0.39 -1.8 807,639 + Atu0806 0.39 +0.8 807,724 - Atu0806 0.49 +0.2 807,760 - Atu0806 0.52 +0.2 807,856 - Atu0806 0.63 +0.2 807,873 + Atu0806 0.65 -1.2 807,875 + Atu0806 0.65 +0.8 807,881 - Atu0806 0.66 +0.7 807,881 - Atu0806 0.66 +0.4 807,915 + Atu0806 0.69 -0.4 807,918 - Atu0806 0.70 +0.5 807,985 + Atu0806 0.77 +0.7 808,020 + Atu0806 0.81 +2.5 808,061 - Atu0806 0.85 +0.6 808,146 + +1.2 808,180 + -0.8 808,231 - +0.2 808,240 + -0.7 808,324 + +0.3 808,329 + +1.9 808,332 - +0.9 808,354 - -0.1 808,462 + +2.5 808,495 + Atu0807 0.13 +0.4 808,559 + Atu0807 0.20 +1.2 808,630 - Atu0807 0.28 -0.2 808,680 + Atu0807 0.33 -0.6 808,740 + Atu0807 0.40 +0.3 808,747 - Atu0807 0.41 -1.0 808,829 - Atu0807 0.50 -1.4 808,879 + Atu0807 0.55 +1.2 808,930 - Atu0807 0.61 +0.6 809,035 + Atu0807 0.72 +0.9 809,051 + Atu0807 0.74 +1.7 809,053 - Atu0807 0.74 -1.4 809,059 - Atu0807 0.75 -0.1 809,069 + Atu0807 0.76 +2.2 809,070 - Atu0807 0.76 +1.6
Or see this region's nucleotide sequence