Experiment: AgroPhage_F10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0681 and Atu8056 are separated by 208 nucleotides Atu8056 and Atu0682 are separated by 62 nucleotides Atu0682 and Atu0683 are separated by 75 nucleotides Atu0683 and Atu0684 are separated by 369 nucleotides
Atu0681: Atu0681 - hypothetical protein, at 675,290 to 675,724
Atu0681
Atu8056: Atu8056 - hypothetical protein, at 675,933 to 676,265
Atu8056
Atu0682: Atu0682 - GroEL chaperonin, at 676,328 to 677,962
Atu0682
Atu0683: Atu0683 - co-chaperonin GroES, at 678,038 to 678,334
Atu0683
Atu0684: Atu0684 - hypothetical protein, at 678,704 to 679,552
Atu0684
Position (kb) 676
677
678 Strain fitness (log2 ratio) -2
-1
0
1
2 at 675.456 kb on + strand, within Atu0681 at 675.464 kb on - strand, within Atu0681 at 675.493 kb on + strand, within Atu0681 at 675.502 kb on + strand, within Atu0681 at 675.522 kb on - strand, within Atu0681 at 675.527 kb on - strand, within Atu0681 at 675.649 kb on + strand, within Atu0681 at 675.659 kb on + strand, within Atu0681 at 675.720 kb on + strand at 675.730 kb on - strand at 675.735 kb on - strand at 675.817 kb on - strand at 676.123 kb on + strand, within Atu8056 at 676.321 kb on + strand at 678.529 kb on - strand at 678.700 kb on + strand at 678.745 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_F10 remove 675,456 + Atu0681 0.38 +2.3 675,464 - Atu0681 0.40 -1.3 675,493 + Atu0681 0.47 -0.7 675,502 + Atu0681 0.49 -0.7 675,522 - Atu0681 0.53 -0.4 675,527 - Atu0681 0.54 -1.8 675,649 + Atu0681 0.83 -0.8 675,659 + Atu0681 0.85 -1.4 675,720 + -0.2 675,730 - +0.1 675,735 - +1.2 675,817 - +0.2 676,123 + Atu8056 0.57 -0.6 676,321 + +0.0 678,529 - -0.3 678,700 + +0.2 678,745 + -1.1
Or see this region's nucleotide sequence