Strain Fitness in Agrobacterium fabrum C58 around Atu0552

Experiment: AgroPhage_F10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0550 and Atu0551 overlap by 4 nucleotidesAtu0551 and Atu0552 are separated by 20 nucleotidesAtu0552 and Atu0553 are separated by 18 nucleotidesAtu0553 and Atu0554 overlap by 4 nucleotidesAtu0554 and Atu0555 are separated by 3 nucleotides Atu0550: Atu0550 - flagellar P-ring protein precursor, at 538,290 to 539,411 Atu0550 Atu0551: Atu0551 - flagellar protein FLGA precursor, at 539,408 to 539,896 Atu0551 Atu0552: Atu0552 - flagellar basal-body rod protein, at 539,917 to 540,705 Atu0552 Atu0553: Atu0553 - flagellar hook-basal body complex protein, at 540,724 to 541,062 Atu0553 Atu0554: Atu0554 - flagellar basal-body rod protein, at 541,059 to 541,478 Atu0554 Atu0555: Atu0555 - flagellar basal-body rod protein FlgB, at 541,482 to 541,874 Atu0555 Position (kb) 539 540 541Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8at 538.917 kb on - strand, within Atu0550at 538.946 kb on - strand, within Atu0550at 538.984 kb on + strand, within Atu0550at 538.984 kb on + strand, within Atu0550at 538.992 kb on - strand, within Atu0550at 538.992 kb on - strand, within Atu0550at 539.017 kb on + strand, within Atu0550at 539.025 kb on - strand, within Atu0550at 539.075 kb on + strand, within Atu0550at 539.076 kb on - strand, within Atu0550at 539.087 kb on + strand, within Atu0550at 539.095 kb on - strand, within Atu0550at 539.146 kb on + strand, within Atu0550at 539.146 kb on + strand, within Atu0550at 539.154 kb on - strand, within Atu0550at 539.154 kb on - strand, within Atu0550at 539.197 kb on + strand, within Atu0550at 539.205 kb on - strand, within Atu0550at 539.207 kb on - strand, within Atu0550at 539.255 kb on - strand, within Atu0550at 539.262 kb on - strand, within Atu0550at 539.329 kb on + strandat 539.337 kb on - strandat 539.361 kb on + strandat 539.366 kb on + strandat 539.366 kb on + strandat 539.384 kb on - strandat 539.430 kb on + strandat 539.438 kb on + strandat 539.446 kb on - strandat 539.480 kb on + strand, within Atu0551at 539.572 kb on + strand, within Atu0551at 539.580 kb on - strand, within Atu0551at 539.675 kb on + strand, within Atu0551at 539.758 kb on + strand, within Atu0551at 539.852 kb on + strandat 539.874 kb on + strandat 539.899 kb on - strandat 539.962 kb on + strandat 540.037 kb on + strand, within Atu0552at 540.059 kb on + strand, within Atu0552at 540.243 kb on - strand, within Atu0552at 540.265 kb on - strand, within Atu0552at 540.369 kb on + strand, within Atu0552at 540.411 kb on - strand, within Atu0552at 540.411 kb on - strand, within Atu0552at 540.417 kb on + strand, within Atu0552at 540.461 kb on + strand, within Atu0552at 540.467 kb on - strand, within Atu0552at 540.541 kb on + strand, within Atu0552at 540.583 kb on + strand, within Atu0552at 540.617 kb on + strand, within Atu0552at 540.617 kb on + strand, within Atu0552at 540.625 kb on - strand, within Atu0552at 540.648 kb on + strandat 540.698 kb on + strandat 540.722 kb on + strandat 540.724 kb on - strandat 540.744 kb on + strandat 540.744 kb on + strandat 540.865 kb on - strand, within Atu0553at 540.938 kb on + strand, within Atu0553at 540.942 kb on - strand, within Atu0553at 540.951 kb on + strand, within Atu0553at 540.964 kb on - strand, within Atu0553at 540.972 kb on - strand, within Atu0553at 540.994 kb on - strand, within Atu0553at 541.037 kb on - strandat 541.119 kb on + strand, within Atu0554at 541.300 kb on + strand, within Atu0554at 541.316 kb on + strand, within Atu0554at 541.319 kb on - strand, within Atu0554at 541.347 kb on + strand, within Atu0554at 541.360 kb on - strand, within Atu0554at 541.417 kb on + strand, within Atu0554at 541.423 kb on - strand, within Atu0554at 541.423 kb on - strand, within Atu0554at 541.425 kb on - strand, within Atu0554at 541.487 kb on + strandat 541.519 kb on + strandat 541.536 kb on - strand, within Atu0555at 541.567 kb on + strand, within Atu0555at 541.570 kb on - strand, within Atu0555at 541.691 kb on + strand, within Atu0555at 541.693 kb on - strand, within Atu0555at 541.693 kb on - strand, within Atu0555at 541.699 kb on - strand, within Atu0555at 541.699 kb on - strand, within Atu0555at 541.704 kb on - strand, within Atu0555

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Per-strain Table

Position Strand Gene LocusTag Fraction AgroPhage_F10
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538,917 - Atu0550 0.56 +7.3
538,946 - Atu0550 0.58 +6.8
538,984 + Atu0550 0.62 +6.7
538,984 + Atu0550 0.62 +7.0
538,992 - Atu0550 0.63 +6.7
538,992 - Atu0550 0.63 +8.0
539,017 + Atu0550 0.65 +6.2
539,025 - Atu0550 0.66 +6.6
539,075 + Atu0550 0.70 +5.8
539,076 - Atu0550 0.70 +5.5
539,087 + Atu0550 0.71 +7.0
539,095 - Atu0550 0.72 +6.8
539,146 + Atu0550 0.76 +6.8
539,146 + Atu0550 0.76 +7.0
539,154 - Atu0550 0.77 +6.0
539,154 - Atu0550 0.77 +6.6
539,197 + Atu0550 0.81 +7.3
539,205 - Atu0550 0.82 +6.6
539,207 - Atu0550 0.82 +6.7
539,255 - Atu0550 0.86 +5.5
539,262 - Atu0550 0.87 +6.5
539,329 + +6.4
539,337 - +6.6
539,361 + +6.6
539,366 + +6.7
539,366 + +6.5
539,384 - +7.5
539,430 + +6.9
539,438 + +7.0
539,446 - +7.0
539,480 + Atu0551 0.15 +6.8
539,572 + Atu0551 0.34 +6.3
539,580 - Atu0551 0.35 +6.5
539,675 + Atu0551 0.55 +6.8
539,758 + Atu0551 0.72 +6.5
539,852 + +3.1
539,874 + +6.9
539,899 - +5.5
539,962 + +6.8
540,037 + Atu0552 0.15 +6.4
540,059 + Atu0552 0.18 +6.3
540,243 - Atu0552 0.41 +5.9
540,265 - Atu0552 0.44 +4.6
540,369 + Atu0552 0.57 +6.9
540,411 - Atu0552 0.63 +6.0
540,411 - Atu0552 0.63 +6.0
540,417 + Atu0552 0.63 +6.3
540,461 + Atu0552 0.69 +5.9
540,467 - Atu0552 0.70 +6.8
540,541 + Atu0552 0.79 +6.2
540,583 + Atu0552 0.84 +6.5
540,617 + Atu0552 0.89 +5.9
540,617 + Atu0552 0.89 +6.8
540,625 - Atu0552 0.90 +6.8
540,648 + +5.1
540,698 + +6.0
540,722 + +7.0
540,724 - +6.5
540,744 + +6.8
540,744 + +7.2
540,865 - Atu0553 0.42 +7.2
540,938 + Atu0553 0.63 +6.8
540,942 - Atu0553 0.64 +6.3
540,951 + Atu0553 0.67 +7.0
540,964 - Atu0553 0.71 +6.6
540,972 - Atu0553 0.73 +6.0
540,994 - Atu0553 0.80 +6.6
541,037 - +6.2
541,119 + Atu0554 0.14 +6.7
541,300 + Atu0554 0.57 +6.2
541,316 + Atu0554 0.61 +6.6
541,319 - Atu0554 0.62 +6.7
541,347 + Atu0554 0.69 +6.4
541,360 - Atu0554 0.72 +6.3
541,417 + Atu0554 0.85 +6.5
541,423 - Atu0554 0.87 +6.0
541,423 - Atu0554 0.87 +5.8
541,425 - Atu0554 0.87 +6.6
541,487 + +6.7
541,519 + +6.9
541,536 - Atu0555 0.14 +5.9
541,567 + Atu0555 0.22 +6.9
541,570 - Atu0555 0.22 +7.0
541,691 + Atu0555 0.53 +6.9
541,693 - Atu0555 0.54 +6.8
541,693 - Atu0555 0.54 +6.0
541,699 - Atu0555 0.55 +6.8
541,699 - Atu0555 0.55 +6.8
541,704 - Atu0555 0.56 +6.8

Or see this region's nucleotide sequence