Experiment: AgroPhage_F10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0548 and Atu0549 overlap by 4 nucleotides Atu0549 and Atu0550 overlap by 4 nucleotides Atu0550 and Atu0551 overlap by 4 nucleotides Atu0551 and Atu0552 are separated by 20 nucleotides
Atu0548: Atu0548 - flagellar L-ring protein precursor, at 537,041 to 537,760
Atu0548
Atu0549: Atu0549 - hypothetical protein, at 537,757 to 538,293
Atu0549
Atu0550: Atu0550 - flagellar P-ring protein precursor, at 538,290 to 539,411
Atu0550
Atu0551: Atu0551 - flagellar protein FLGA precursor, at 539,408 to 539,896
Atu0551
Atu0552: Atu0552 - flagellar basal-body rod protein, at 539,917 to 540,705
Atu0552
Position (kb) 538
539
540 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8 at 537.304 kb on + strand, within Atu0548 at 537.320 kb on + strand, within Atu0548 at 537.327 kb on + strand, within Atu0548 at 537.327 kb on + strand, within Atu0548 at 537.327 kb on + strand, within Atu0548 at 537.327 kb on + strand, within Atu0548 at 537.333 kb on + strand, within Atu0548 at 537.333 kb on + strand, within Atu0548 at 537.335 kb on - strand, within Atu0548 at 537.341 kb on - strand, within Atu0548 at 537.351 kb on - strand, within Atu0548 at 537.422 kb on + strand, within Atu0548 at 537.494 kb on - strand, within Atu0548 at 537.521 kb on - strand, within Atu0548 at 537.534 kb on + strand, within Atu0548 at 537.534 kb on + strand, within Atu0548 at 537.542 kb on - strand, within Atu0548 at 537.542 kb on - strand, within Atu0548 at 537.542 kb on - strand, within Atu0548 at 537.542 kb on - strand, within Atu0548 at 537.542 kb on - strand, within Atu0548 at 537.542 kb on - strand, within Atu0548 at 537.606 kb on - strand, within Atu0548 at 537.622 kb on - strand, within Atu0548 at 537.831 kb on - strand, within Atu0549 at 537.846 kb on + strand, within Atu0549 at 538.007 kb on + strand, within Atu0549 at 538.015 kb on - strand, within Atu0549 at 538.046 kb on + strand, within Atu0549 at 538.066 kb on + strand, within Atu0549 at 538.100 kb on + strand, within Atu0549 at 538.108 kb on - strand, within Atu0549 at 538.108 kb on - strand, within Atu0549 at 538.108 kb on - strand, within Atu0549 at 538.313 kb on + strand at 538.406 kb on + strand, within Atu0550 at 538.430 kb on + strand, within Atu0550 at 538.506 kb on - strand, within Atu0550 at 538.525 kb on + strand, within Atu0550 at 538.532 kb on + strand, within Atu0550 at 538.555 kb on - strand, within Atu0550 at 538.562 kb on - strand, within Atu0550 at 538.565 kb on + strand, within Atu0550 at 538.598 kb on - strand, within Atu0550 at 538.633 kb on + strand, within Atu0550 at 538.685 kb on + strand, within Atu0550 at 538.685 kb on + strand, within Atu0550 at 538.693 kb on - strand, within Atu0550 at 538.770 kb on + strand, within Atu0550 at 538.771 kb on - strand, within Atu0550 at 538.917 kb on - strand, within Atu0550 at 538.946 kb on - strand, within Atu0550 at 538.984 kb on + strand, within Atu0550 at 538.984 kb on + strand, within Atu0550 at 538.992 kb on - strand, within Atu0550 at 538.992 kb on - strand, within Atu0550 at 539.017 kb on + strand, within Atu0550 at 539.025 kb on - strand, within Atu0550 at 539.075 kb on + strand, within Atu0550 at 539.076 kb on - strand, within Atu0550 at 539.087 kb on + strand, within Atu0550 at 539.095 kb on - strand, within Atu0550 at 539.146 kb on + strand, within Atu0550 at 539.146 kb on + strand, within Atu0550 at 539.154 kb on - strand, within Atu0550 at 539.154 kb on - strand, within Atu0550 at 539.197 kb on + strand, within Atu0550 at 539.205 kb on - strand, within Atu0550 at 539.207 kb on - strand, within Atu0550 at 539.255 kb on - strand, within Atu0550 at 539.262 kb on - strand, within Atu0550 at 539.329 kb on + strand at 539.337 kb on - strand at 539.361 kb on + strand at 539.366 kb on + strand at 539.366 kb on + strand at 539.384 kb on - strand at 539.430 kb on + strand at 539.438 kb on + strand at 539.446 kb on - strand at 539.480 kb on + strand, within Atu0551 at 539.572 kb on + strand, within Atu0551 at 539.580 kb on - strand, within Atu0551 at 539.675 kb on + strand, within Atu0551 at 539.758 kb on + strand, within Atu0551 at 539.852 kb on + strand at 539.874 kb on + strand at 539.899 kb on - strand at 539.962 kb on + strand at 540.037 kb on + strand, within Atu0552 at 540.059 kb on + strand, within Atu0552 at 540.243 kb on - strand, within Atu0552 at 540.265 kb on - strand, within Atu0552 at 540.369 kb on + strand, within Atu0552 at 540.411 kb on - strand, within Atu0552 at 540.411 kb on - strand, within Atu0552
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_F10 remove 537,304 + Atu0548 0.37 +5.9 537,320 + Atu0548 0.39 +6.6 537,327 + Atu0548 0.40 +5.8 537,327 + Atu0548 0.40 +6.8 537,327 + Atu0548 0.40 +7.0 537,327 + Atu0548 0.40 +6.8 537,333 + Atu0548 0.41 +6.9 537,333 + Atu0548 0.41 +5.8 537,335 - Atu0548 0.41 +7.1 537,341 - Atu0548 0.42 +6.4 537,351 - Atu0548 0.43 +5.8 537,422 + Atu0548 0.53 +6.7 537,494 - Atu0548 0.63 +6.7 537,521 - Atu0548 0.67 +6.0 537,534 + Atu0548 0.68 +5.3 537,534 + Atu0548 0.68 +6.9 537,542 - Atu0548 0.70 +5.9 537,542 - Atu0548 0.70 +6.8 537,542 - Atu0548 0.70 +6.9 537,542 - Atu0548 0.70 +6.9 537,542 - Atu0548 0.70 +6.6 537,542 - Atu0548 0.70 +6.7 537,606 - Atu0548 0.78 +6.1 537,622 - Atu0548 0.81 +6.6 537,831 - Atu0549 0.14 +6.0 537,846 + Atu0549 0.17 +6.4 538,007 + Atu0549 0.47 +5.9 538,015 - Atu0549 0.48 +6.5 538,046 + Atu0549 0.54 +6.5 538,066 + Atu0549 0.58 +6.5 538,100 + Atu0549 0.64 +6.2 538,108 - Atu0549 0.65 +6.6 538,108 - Atu0549 0.65 +4.5 538,108 - Atu0549 0.65 +6.3 538,313 + +6.4 538,406 + Atu0550 0.10 +5.4 538,430 + Atu0550 0.12 +6.0 538,506 - Atu0550 0.19 +6.1 538,525 + Atu0550 0.21 +6.0 538,532 + Atu0550 0.22 +5.8 538,555 - Atu0550 0.24 +6.8 538,562 - Atu0550 0.24 +5.5 538,565 + Atu0550 0.25 +6.8 538,598 - Atu0550 0.27 +5.3 538,633 + Atu0550 0.31 +5.3 538,685 + Atu0550 0.35 +6.5 538,685 + Atu0550 0.35 +6.9 538,693 - Atu0550 0.36 +6.0 538,770 + Atu0550 0.43 +6.2 538,771 - Atu0550 0.43 +6.6 538,917 - Atu0550 0.56 +7.3 538,946 - Atu0550 0.58 +6.8 538,984 + Atu0550 0.62 +6.7 538,984 + Atu0550 0.62 +7.0 538,992 - Atu0550 0.63 +6.7 538,992 - Atu0550 0.63 +8.0 539,017 + Atu0550 0.65 +6.2 539,025 - Atu0550 0.66 +6.6 539,075 + Atu0550 0.70 +5.8 539,076 - Atu0550 0.70 +5.5 539,087 + Atu0550 0.71 +7.0 539,095 - Atu0550 0.72 +6.8 539,146 + Atu0550 0.76 +6.8 539,146 + Atu0550 0.76 +7.0 539,154 - Atu0550 0.77 +6.0 539,154 - Atu0550 0.77 +6.6 539,197 + Atu0550 0.81 +7.3 539,205 - Atu0550 0.82 +6.6 539,207 - Atu0550 0.82 +6.7 539,255 - Atu0550 0.86 +5.5 539,262 - Atu0550 0.87 +6.5 539,329 + +6.4 539,337 - +6.6 539,361 + +6.6 539,366 + +6.7 539,366 + +6.5 539,384 - +7.5 539,430 + +6.9 539,438 + +7.0 539,446 - +7.0 539,480 + Atu0551 0.15 +6.8 539,572 + Atu0551 0.34 +6.3 539,580 - Atu0551 0.35 +6.5 539,675 + Atu0551 0.55 +6.8 539,758 + Atu0551 0.72 +6.5 539,852 + +3.1 539,874 + +6.9 539,899 - +5.5 539,962 + +6.8 540,037 + Atu0552 0.15 +6.4 540,059 + Atu0552 0.18 +6.3 540,243 - Atu0552 0.41 +5.9 540,265 - Atu0552 0.44 +4.6 540,369 + Atu0552 0.57 +6.9 540,411 - Atu0552 0.63 +6.0 540,411 - Atu0552 0.63 +6.0
Or see this region's nucleotide sequence