Experiment: AgroPhage_F10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0523 and Atu0524 are separated by 421 nucleotides Atu0524 and Atu0525 overlap by 1 nucleotides Atu0525 and Atu0526 are separated by 148 nucleotides
Atu0523: Atu0523 - flagellar M-ring protein, at 512,099 to 513,799
Atu0523
Atu0524: Atu0524 - transcriptional regulator, LuxR family, at 514,221 to 514,901
Atu0524
Atu0525: Atu0525 - transcriptional regulator, LuxR family, at 514,901 to 515,656
Atu0525
Atu0526: Atu0526 - methyl-accepting chemotaxis protein, at 515,805 to 517,652
Atu0526
Position (kb) 514
515 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8 at 513.230 kb on - strand, within Atu0523 at 513.253 kb on + strand, within Atu0523 at 513.253 kb on + strand, within Atu0523 at 513.253 kb on + strand, within Atu0523 at 513.323 kb on + strand, within Atu0523 at 513.327 kb on + strand, within Atu0523 at 513.355 kb on - strand, within Atu0523 at 513.486 kb on + strand, within Atu0523 at 513.494 kb on - strand, within Atu0523 at 513.494 kb on - strand, within Atu0523 at 513.603 kb on - strand, within Atu0523 at 513.618 kb on - strand, within Atu0523 at 513.720 kb on + strand at 513.724 kb on + strand at 513.734 kb on + strand at 513.734 kb on + strand at 513.915 kb on + strand at 514.123 kb on - strand at 514.150 kb on + strand at 514.217 kb on + strand at 514.223 kb on + strand at 514.231 kb on - strand at 514.267 kb on - strand at 514.305 kb on - strand, within Atu0524 at 514.305 kb on - strand, within Atu0524 at 514.426 kb on + strand, within Atu0524 at 514.516 kb on + strand, within Atu0524 at 514.531 kb on + strand, within Atu0524 at 514.561 kb on + strand, within Atu0524 at 514.569 kb on - strand, within Atu0524 at 514.750 kb on - strand, within Atu0524 at 514.757 kb on + strand, within Atu0524 at 514.886 kb on + strand at 514.919 kb on - strand at 514.944 kb on - strand at 515.258 kb on + strand, within Atu0525 at 515.317 kb on + strand, within Atu0525 at 515.443 kb on + strand, within Atu0525 at 515.527 kb on + strand, within Atu0525 at 515.546 kb on - strand, within Atu0525 at 515.547 kb on + strand, within Atu0525 at 515.569 kb on - strand, within Atu0525 at 515.649 kb on - strand at 515.666 kb on + strand at 515.666 kb on + strand at 515.674 kb on - strand at 515.674 kb on - strand at 515.679 kb on + strand at 515.687 kb on - strand at 515.819 kb on + strand at 515.827 kb on - strand at 515.840 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_F10 remove 513,230 - Atu0523 0.66 +6.6 513,253 + Atu0523 0.68 +6.6 513,253 + Atu0523 0.68 +6.1 513,253 + Atu0523 0.68 +6.7 513,323 + Atu0523 0.72 +5.3 513,327 + Atu0523 0.72 +6.4 513,355 - Atu0523 0.74 +6.4 513,486 + Atu0523 0.82 +6.2 513,494 - Atu0523 0.82 +6.9 513,494 - Atu0523 0.82 +6.8 513,603 - Atu0523 0.88 +6.9 513,618 - Atu0523 0.89 +7.0 513,720 + +7.4 513,724 + +6.5 513,734 + +6.4 513,734 + +6.4 513,915 + -1.6 514,123 - +1.0 514,150 + +0.3 514,217 + +7.3 514,223 + +1.6 514,231 - +3.0 514,267 - +5.7 514,305 - Atu0524 0.12 +7.4 514,305 - Atu0524 0.12 +6.9 514,426 + Atu0524 0.30 +7.0 514,516 + Atu0524 0.43 +6.7 514,531 + Atu0524 0.46 +7.3 514,561 + Atu0524 0.50 +7.2 514,569 - Atu0524 0.51 +6.2 514,750 - Atu0524 0.78 +5.9 514,757 + Atu0524 0.79 +7.9 514,886 + +1.2 514,919 - +0.2 514,944 - +5.0 515,258 + Atu0525 0.47 +7.2 515,317 + Atu0525 0.55 +7.1 515,443 + Atu0525 0.72 +6.9 515,527 + Atu0525 0.83 +7.1 515,546 - Atu0525 0.85 +7.8 515,547 + Atu0525 0.85 +7.6 515,569 - Atu0525 0.88 +7.5 515,649 - +7.7 515,666 + +1.0 515,666 + +0.5 515,674 - +1.2 515,674 - -1.0 515,679 + +0.1 515,687 - -0.1 515,819 + -0.3 515,827 - +0.2 515,840 + -0.0
Or see this region's nucleotide sequence