Strain Fitness in Agrobacterium fabrum C58 around Atu8175

Experiment: AgroPhage_F04

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu2253 and Atu2254 are separated by 36 nucleotidesAtu2254 and Atu8175 overlap by 4 nucleotidesAtu8175 and Atu2257 are separated by 1 nucleotides Atu2253: Atu2253 - MoxR family protein, at 2,224,295 to 2,225,305 Atu2253 Atu2254: Atu2254 - hypothetical protein, at 2,225,342 to 2,226,256 Atu2254 Atu8175: Atu8175 - putative transmembrane protein, RNA-binding region RNP-1 (RNA recognition motif), at 2,226,253 to 2,229,063 Atu8175 Atu2257: Atu2257 - hypothetical protein, at 2,229,065 to 2,231,149 Atu2257 Position (kb) 2226 2227 2228 2229 2230Strain fitness (log2 ratio) -1 0 1at 2225.299 kb on + strandat 2225.299 kb on + strandat 2225.314 kb on + strandat 2225.332 kb on + strandat 2226.238 kb on + strandat 2226.250 kb on + strandat 2226.250 kb on + strandat 2229.009 kb on + strandat 2229.017 kb on - strandat 2229.017 kb on - strandat 2229.017 kb on - strandat 2229.050 kb on + strandat 2229.068 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction AgroPhage_F04
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2,225,299 + +0.1
2,225,299 + -1.0
2,225,314 + +0.7
2,225,332 + +0.2
2,226,238 + +0.6
2,226,250 + +0.5
2,226,250 + -0.6
2,229,009 + -0.2
2,229,017 - +1.3
2,229,017 - +0.5
2,229,017 - +0.1
2,229,050 + -0.4
2,229,068 + +0.1

Or see this region's nucleotide sequence