Experiment: AgroPhage_F04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3689 and Atu3690 overlap by 4 nucleotides Atu3690 and Atu3691 overlap by 8 nucleotides Atu3691 and Atu3692 are separated by 351 nucleotides Atu3692 and Atu3693 are separated by 47 nucleotides
Atu3689: Atu3689 - iron(III ABC transporter permease dicitrate ABC transporter permease, at 764,306 to 765,355
Atu3689
Atu3690: Atu3690 - iron (III ABC transporter permease dicitrate ABC transporter permease, at 765,352 to 766,326
Atu3690
Atu3691: Atu3691 - iron (III) dicitrate ABC transporter ATPase, at 766,319 to 767,122
Atu3691
Atu3692: Atu3692 - sigma factor, at 767,474 to 768,016
Atu3692
Atu3693: Atu3693 - two component sensor kinase, at 768,064 to 769,035
Atu3693
Position (kb) 766
767
768 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 765.414 kb on - strand at 765.419 kb on - strand at 765.419 kb on - strand at 765.577 kb on + strand, within Atu3690 at 765.785 kb on + strand, within Atu3690 at 765.785 kb on + strand, within Atu3690 at 765.785 kb on + strand, within Atu3690 at 765.785 kb on + strand, within Atu3690 at 765.785 kb on + strand, within Atu3690 at 765.793 kb on - strand, within Atu3690 at 765.893 kb on + strand, within Atu3690 at 765.898 kb on + strand, within Atu3690 at 766.010 kb on + strand, within Atu3690 at 766.023 kb on + strand, within Atu3690 at 766.104 kb on - strand, within Atu3690 at 766.596 kb on - strand, within Atu3691 at 766.618 kb on + strand, within Atu3691 at 766.618 kb on + strand, within Atu3691 at 766.626 kb on - strand, within Atu3691 at 766.638 kb on - strand, within Atu3691 at 766.687 kb on + strand, within Atu3691 at 766.687 kb on + strand, within Atu3691 at 766.689 kb on + strand, within Atu3691 at 766.718 kb on - strand, within Atu3691 at 766.731 kb on + strand, within Atu3691 at 766.902 kb on + strand, within Atu3691 at 766.931 kb on - strand, within Atu3691 at 766.971 kb on - strand, within Atu3691 at 767.001 kb on - strand, within Atu3691 at 767.058 kb on + strand at 767.086 kb on - strand at 767.097 kb on + strand at 767.115 kb on - strand at 767.115 kb on - strand at 767.116 kb on + strand at 767.386 kb on + strand at 767.392 kb on + strand at 767.394 kb on - strand at 767.400 kb on - strand at 767.400 kb on - strand at 767.400 kb on - strand at 767.557 kb on + strand, within Atu3692 at 767.678 kb on + strand, within Atu3692 at 767.767 kb on + strand, within Atu3692 at 767.772 kb on + strand, within Atu3692 at 767.827 kb on + strand, within Atu3692 at 767.885 kb on + strand, within Atu3692 at 767.955 kb on - strand, within Atu3692 at 767.983 kb on - strand at 768.048 kb on + strand at 768.091 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_F04 remove 765,414 - -2.8 765,419 - +0.1 765,419 - +0.0 765,577 + Atu3690 0.23 +0.8 765,785 + Atu3690 0.44 +1.3 765,785 + Atu3690 0.44 -1.6 765,785 + Atu3690 0.44 -0.1 765,785 + Atu3690 0.44 -0.2 765,785 + Atu3690 0.44 -0.2 765,793 - Atu3690 0.45 -0.3 765,893 + Atu3690 0.55 -0.7 765,898 + Atu3690 0.56 +1.3 766,010 + Atu3690 0.67 +0.3 766,023 + Atu3690 0.69 -1.4 766,104 - Atu3690 0.77 +0.4 766,596 - Atu3691 0.34 -0.5 766,618 + Atu3691 0.37 +1.0 766,618 + Atu3691 0.37 -1.1 766,626 - Atu3691 0.38 -2.8 766,638 - Atu3691 0.40 -1.4 766,687 + Atu3691 0.46 -0.1 766,687 + Atu3691 0.46 -0.7 766,689 + Atu3691 0.46 +0.5 766,718 - Atu3691 0.50 +0.2 766,731 + Atu3691 0.51 -1.1 766,902 + Atu3691 0.73 +0.4 766,931 - Atu3691 0.76 -0.5 766,971 - Atu3691 0.81 -0.7 767,001 - Atu3691 0.85 -1.3 767,058 + +1.0 767,086 - -0.5 767,097 + -1.1 767,115 - +0.2 767,115 - -0.8 767,116 + +0.0 767,386 + +1.8 767,392 + +0.9 767,394 - -0.1 767,400 - +0.7 767,400 - -0.7 767,400 - -1.1 767,557 + Atu3692 0.15 +0.9 767,678 + Atu3692 0.38 -0.0 767,767 + Atu3692 0.54 +0.3 767,772 + Atu3692 0.55 -0.4 767,827 + Atu3692 0.65 +0.5 767,885 + Atu3692 0.76 +0.5 767,955 - Atu3692 0.89 +0.9 767,983 - +0.4 768,048 + +1.7 768,091 - -0.9
Or see this region's nucleotide sequence