Experiment: AgroPhage_F04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3492 and Atu3493 are separated by 52 nucleotides Atu3493 and Atu3494 are separated by 317 nucleotides
Atu3492: Atu3492 - sugar kinase, at 542,523 to 543,905
Atu3492
Atu3493: Atu3493 - non-heme haloperoxidase, at 543,958 to 544,794
Atu3493
Atu3494: Atu3494 - hypothetical protein, at 545,112 to 545,807
Atu3494
Position (kb) 543
544
545 Strain fitness (log2 ratio) -2
-1
0
1 at 542.985 kb on + strand, within Atu3492 at 543.061 kb on + strand, within Atu3492 at 543.071 kb on + strand, within Atu3492 at 543.221 kb on + strand, within Atu3492 at 543.622 kb on + strand, within Atu3492 at 543.767 kb on - strand at 543.817 kb on - strand at 543.859 kb on - strand at 543.955 kb on + strand at 544.000 kb on + strand at 544.010 kb on + strand at 544.150 kb on - strand, within Atu3493 at 544.193 kb on - strand, within Atu3493 at 544.203 kb on - strand, within Atu3493 at 544.240 kb on + strand, within Atu3493 at 544.391 kb on + strand, within Atu3493 at 544.583 kb on - strand, within Atu3493 at 544.649 kb on - strand, within Atu3493 at 544.759 kb on + strand at 544.829 kb on + strand at 544.970 kb on + strand at 544.985 kb on - strand at 545.117 kb on - strand at 545.197 kb on + strand, within Atu3494 at 545.220 kb on - strand, within Atu3494 at 545.256 kb on - strand, within Atu3494 at 545.361 kb on - strand, within Atu3494 at 545.422 kb on + strand, within Atu3494 at 545.427 kb on + strand, within Atu3494 at 545.435 kb on - strand, within Atu3494 at 545.473 kb on + strand, within Atu3494 at 545.489 kb on + strand, within Atu3494 at 545.675 kb on + strand, within Atu3494 at 545.738 kb on + strand at 545.749 kb on + strand at 545.777 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_F04 remove 542,985 + Atu3492 0.33 -0.6 543,061 + Atu3492 0.39 -0.1 543,071 + Atu3492 0.40 -1.8 543,221 + Atu3492 0.50 +0.4 543,622 + Atu3492 0.79 -1.9 543,767 - +0.6 543,817 - -0.1 543,859 - +0.1 543,955 + +1.0 544,000 + +0.3 544,010 + -0.9 544,150 - Atu3493 0.23 -1.2 544,193 - Atu3493 0.28 -0.2 544,203 - Atu3493 0.29 -2.1 544,240 + Atu3493 0.34 -2.1 544,391 + Atu3493 0.52 +0.5 544,583 - Atu3493 0.75 -1.0 544,649 - Atu3493 0.83 -2.1 544,759 + -1.8 544,829 + -2.0 544,970 + -1.3 544,985 - -1.2 545,117 - -0.6 545,197 + Atu3494 0.12 -0.9 545,220 - Atu3494 0.16 -0.7 545,256 - Atu3494 0.21 -0.3 545,361 - Atu3494 0.36 -1.8 545,422 + Atu3494 0.45 +0.4 545,427 + Atu3494 0.45 -1.3 545,435 - Atu3494 0.46 +0.5 545,473 + Atu3494 0.52 -0.1 545,489 + Atu3494 0.54 +1.2 545,675 + Atu3494 0.81 -0.6 545,738 + -2.5 545,749 + -1.9 545,777 + -0.1
Or see this region's nucleotide sequence