Experiment: AgroPhage_F04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3445 and Atu3446 are separated by 93 nucleotides Atu3446 and Atu3447 overlap by 10 nucleotides Atu3447 and Atu3448 are separated by 7 nucleotides
Atu3445: Atu3445 - hippurate hydrolase, at 493,374 to 494,573
Atu3445
Atu3446: Atu3446 - monooxygenase, at 494,667 to 495,836
Atu3446
Atu3447: Atu3447 - hypothetical protein, at 495,827 to 496,720
Atu3447
Atu3448: Atu3448 - dibenzothiophene desulfurization protein B, at 496,728 to 497,780
Atu3448
Position (kb) 494
495
496 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 493.683 kb on + strand, within Atu3445 at 493.766 kb on - strand, within Atu3445 at 493.856 kb on + strand, within Atu3445 at 493.887 kb on - strand, within Atu3445 at 493.896 kb on - strand, within Atu3445 at 493.954 kb on + strand, within Atu3445 at 493.962 kb on - strand, within Atu3445 at 493.997 kb on + strand, within Atu3445 at 494.039 kb on + strand, within Atu3445 at 494.047 kb on - strand, within Atu3445 at 494.118 kb on + strand, within Atu3445 at 494.118 kb on + strand, within Atu3445 at 494.118 kb on + strand, within Atu3445 at 494.118 kb on + strand, within Atu3445 at 494.118 kb on + strand, within Atu3445 at 494.135 kb on - strand, within Atu3445 at 494.207 kb on + strand, within Atu3445 at 494.225 kb on - strand, within Atu3445 at 494.230 kb on - strand, within Atu3445 at 494.244 kb on - strand, within Atu3445 at 494.271 kb on - strand, within Atu3445 at 494.374 kb on - strand, within Atu3445 at 494.429 kb on + strand, within Atu3445 at 494.436 kb on + strand, within Atu3445 at 494.479 kb on - strand at 494.507 kb on + strand at 494.665 kb on + strand at 494.856 kb on + strand, within Atu3446 at 494.893 kb on - strand, within Atu3446 at 495.018 kb on - strand, within Atu3446 at 495.062 kb on - strand, within Atu3446 at 495.259 kb on - strand, within Atu3446 at 495.264 kb on - strand, within Atu3446 at 495.609 kb on + strand, within Atu3446 at 495.643 kb on + strand, within Atu3446 at 495.674 kb on - strand, within Atu3446 at 495.757 kb on - strand at 495.800 kb on + strand at 495.800 kb on + strand at 495.800 kb on + strand at 495.808 kb on - strand at 495.964 kb on - strand, within Atu3447 at 496.044 kb on - strand, within Atu3447 at 496.044 kb on - strand, within Atu3447 at 496.137 kb on - strand, within Atu3447 at 496.244 kb on - strand, within Atu3447 at 496.474 kb on - strand, within Atu3447 at 496.491 kb on - strand, within Atu3447 at 496.538 kb on + strand, within Atu3447 at 496.724 kb on - strand at 496.748 kb on - strand at 496.753 kb on + strand at 496.771 kb on + strand at 496.774 kb on - strand at 496.779 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_F04 remove 493,683 + Atu3445 0.26 -0.4 493,766 - Atu3445 0.33 -0.6 493,856 + Atu3445 0.40 +0.6 493,887 - Atu3445 0.43 -0.4 493,896 - Atu3445 0.43 -1.1 493,954 + Atu3445 0.48 -0.8 493,962 - Atu3445 0.49 -0.1 493,997 + Atu3445 0.52 +0.3 494,039 + Atu3445 0.55 -1.4 494,047 - Atu3445 0.56 -2.1 494,118 + Atu3445 0.62 -0.6 494,118 + Atu3445 0.62 -0.1 494,118 + Atu3445 0.62 +0.4 494,118 + Atu3445 0.62 +0.1 494,118 + Atu3445 0.62 +0.6 494,135 - Atu3445 0.63 +0.8 494,207 + Atu3445 0.69 -0.1 494,225 - Atu3445 0.71 +1.3 494,230 - Atu3445 0.71 -1.1 494,244 - Atu3445 0.72 -2.2 494,271 - Atu3445 0.75 -1.3 494,374 - Atu3445 0.83 -0.8 494,429 + Atu3445 0.88 -0.4 494,436 + Atu3445 0.89 +0.4 494,479 - +0.1 494,507 + -0.7 494,665 + -0.9 494,856 + Atu3446 0.16 -0.9 494,893 - Atu3446 0.19 +0.3 495,018 - Atu3446 0.30 -0.4 495,062 - Atu3446 0.34 -1.3 495,259 - Atu3446 0.51 -1.4 495,264 - Atu3446 0.51 -0.2 495,609 + Atu3446 0.81 -3.0 495,643 + Atu3446 0.83 -0.6 495,674 - Atu3446 0.86 -0.6 495,757 - -0.2 495,800 + -0.5 495,800 + +0.1 495,800 + +0.8 495,808 - -0.3 495,964 - Atu3447 0.15 +3.9 496,044 - Atu3447 0.24 -0.8 496,044 - Atu3447 0.24 -0.0 496,137 - Atu3447 0.35 -0.2 496,244 - Atu3447 0.47 -2.0 496,474 - Atu3447 0.72 -0.0 496,491 - Atu3447 0.74 +0.4 496,538 + Atu3447 0.80 -0.8 496,724 - +4.9 496,748 - +0.3 496,753 + +1.2 496,771 + -1.2 496,774 - -0.3 496,779 - +0.5
Or see this region's nucleotide sequence