Experiment: AgroPhage_F04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0996 and Atu0997 are separated by 104 nucleotides Atu0997 and Atu0998 are separated by 122 nucleotides
Atu0996: Atu0996 - zinc-binding dehydrogenase, at 992,564 to 993,580
Atu0996
Atu0997: Atu0997 - hypothetical protein, at 993,685 to 994,074
Atu0997
Atu0998: Atu0998 - undecaprenyl pyrophosphate phosphatase, possible bacitracin resistance protein, at 994,197 to 995,033
Atu0998
Position (kb) 993
994
995 Strain fitness (log2 ratio) -2
-1
0
1 at 992.743 kb on - strand, within Atu0996 at 993.021 kb on + strand, within Atu0996 at 993.021 kb on + strand, within Atu0996 at 993.145 kb on - strand, within Atu0996 at 993.220 kb on + strand, within Atu0996 at 993.333 kb on + strand, within Atu0996 at 993.333 kb on + strand, within Atu0996 at 993.341 kb on - strand, within Atu0996 at 993.473 kb on - strand, within Atu0996 at 993.509 kb on + strand at 993.543 kb on + strand at 993.682 kb on - strand at 993.773 kb on + strand, within Atu0997 at 993.800 kb on - strand, within Atu0997 at 993.830 kb on + strand, within Atu0997 at 993.842 kb on + strand, within Atu0997 at 993.888 kb on + strand, within Atu0997 at 993.890 kb on - strand, within Atu0997 at 994.998 kb on + strand at 995.000 kb on + strand at 995.000 kb on + strand at 995.000 kb on + strand at 995.034 kb on + strand at 995.034 kb on + strand at 995.034 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_F04 remove 992,743 - Atu0996 0.18 -0.3 993,021 + Atu0996 0.45 +1.4 993,021 + Atu0996 0.45 +0.6 993,145 - Atu0996 0.57 -1.0 993,220 + Atu0996 0.65 -2.7 993,333 + Atu0996 0.76 -0.8 993,333 + Atu0996 0.76 -1.1 993,341 - Atu0996 0.76 +0.3 993,473 - Atu0996 0.89 -0.8 993,509 + -1.5 993,543 + +0.4 993,682 - -0.8 993,773 + Atu0997 0.23 +1.2 993,800 - Atu0997 0.29 -0.0 993,830 + Atu0997 0.37 +1.7 993,842 + Atu0997 0.40 +0.7 993,888 + Atu0997 0.52 +1.3 993,890 - Atu0997 0.53 +1.0 994,998 + -0.1 995,000 + -0.2 995,000 + -1.5 995,000 + +0.8 995,034 + -0.9 995,034 + +0.3 995,034 + -0.1
Or see this region's nucleotide sequence