Experiment: AgroPhage_F04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0796 and Atu0797 are separated by 48 nucleotides Atu0797 and Atu0798 overlap by 4 nucleotides Atu0798 and Atu8137 are separated by 98 nucleotides Atu8137 and Atu0800 are separated by 128 nucleotides
Atu0796: Atu0796 - putative peptidase, at 792,337 to 793,092
Atu0796
Atu0797: Atu0797 - hydrolase, at 793,141 to 793,752
Atu0797
Atu0798: Atu0798 - A/G-specific adenine glycosylase, at 793,749 to 794,852
Atu0798
Atu8137: Atu8137 - hypothetical protein, at 794,951 to 795,478
Atu8137
Atu0800: Atu0800 - hypothetical protein, at 795,607 to 796,287
Atu0800
Position (kb) 793
794
795 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 792.951 kb on + strand, within Atu0796 at 792.976 kb on - strand, within Atu0796 at 792.981 kb on - strand, within Atu0796 at 793.098 kb on + strand at 793.098 kb on + strand at 793.106 kb on - strand at 793.106 kb on - strand at 793.106 kb on - strand at 793.120 kb on - strand at 793.139 kb on + strand at 793.139 kb on + strand at 793.146 kb on + strand at 793.146 kb on - strand at 793.187 kb on - strand at 793.220 kb on + strand, within Atu0797 at 793.220 kb on + strand, within Atu0797 at 793.350 kb on + strand, within Atu0797 at 793.350 kb on + strand, within Atu0797 at 793.350 kb on + strand, within Atu0797 at 793.384 kb on - strand, within Atu0797 at 793.448 kb on + strand, within Atu0797 at 793.482 kb on + strand, within Atu0797 at 793.484 kb on + strand, within Atu0797 at 793.490 kb on - strand, within Atu0797 at 793.490 kb on - strand, within Atu0797 at 793.564 kb on + strand, within Atu0797 at 793.612 kb on + strand, within Atu0797 at 793.705 kb on + strand at 793.850 kb on + strand at 793.869 kb on - strand, within Atu0798 at 793.896 kb on - strand, within Atu0798 at 793.896 kb on - strand, within Atu0798 at 793.896 kb on - strand, within Atu0798 at 793.896 kb on - strand, within Atu0798 at 793.910 kb on - strand, within Atu0798 at 793.912 kb on + strand, within Atu0798 at 793.930 kb on - strand, within Atu0798 at 793.932 kb on + strand, within Atu0798 at 793.940 kb on - strand, within Atu0798 at 793.980 kb on + strand, within Atu0798 at 793.990 kb on - strand, within Atu0798 at 793.995 kb on - strand, within Atu0798 at 794.002 kb on - strand, within Atu0798 at 794.020 kb on + strand, within Atu0798 at 794.028 kb on - strand, within Atu0798 at 794.050 kb on - strand, within Atu0798 at 794.058 kb on - strand, within Atu0798 at 794.084 kb on + strand, within Atu0798 at 794.097 kb on - strand, within Atu0798 at 794.098 kb on + strand, within Atu0798 at 794.098 kb on + strand, within Atu0798 at 794.117 kb on + strand, within Atu0798 at 794.122 kb on + strand, within Atu0798 at 794.130 kb on - strand, within Atu0798 at 794.200 kb on - strand, within Atu0798 at 794.200 kb on - strand, within Atu0798 at 794.216 kb on - strand, within Atu0798 at 794.223 kb on - strand, within Atu0798 at 794.295 kb on + strand, within Atu0798 at 794.357 kb on - strand, within Atu0798 at 794.357 kb on - strand, within Atu0798 at 794.403 kb on + strand, within Atu0798 at 794.432 kb on - strand, within Atu0798 at 794.488 kb on - strand, within Atu0798 at 794.579 kb on + strand, within Atu0798 at 794.587 kb on - strand, within Atu0798 at 794.593 kb on + strand, within Atu0798 at 794.681 kb on + strand, within Atu0798 at 794.765 kb on - strand at 794.896 kb on + strand at 794.988 kb on - strand at 795.451 kb on - strand at 795.472 kb on + strand at 795.480 kb on - strand at 795.482 kb on + strand at 795.519 kb on + strand at 795.524 kb on + strand at 795.527 kb on - strand at 795.577 kb on + strand at 795.577 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_F04 remove 792,951 + Atu0796 0.81 -0.2 792,976 - Atu0796 0.85 -0.4 792,981 - Atu0796 0.85 -0.9 793,098 + -0.5 793,098 + -0.4 793,106 - -0.1 793,106 - +0.5 793,106 - -0.7 793,120 - -0.8 793,139 + -0.1 793,139 + -0.6 793,146 + +1.0 793,146 - +0.2 793,187 - +0.3 793,220 + Atu0797 0.13 +0.8 793,220 + Atu0797 0.13 +0.2 793,350 + Atu0797 0.34 -0.9 793,350 + Atu0797 0.34 -0.4 793,350 + Atu0797 0.34 -1.1 793,384 - Atu0797 0.40 -0.8 793,448 + Atu0797 0.50 +0.5 793,482 + Atu0797 0.56 +0.7 793,484 + Atu0797 0.56 +0.9 793,490 - Atu0797 0.57 -0.4 793,490 - Atu0797 0.57 -0.6 793,564 + Atu0797 0.69 +0.3 793,612 + Atu0797 0.77 +1.2 793,705 + +0.4 793,850 + +0.1 793,869 - Atu0798 0.11 +0.7 793,896 - Atu0798 0.13 +3.6 793,896 - Atu0798 0.13 +0.9 793,896 - Atu0798 0.13 -0.3 793,896 - Atu0798 0.13 -2.2 793,910 - Atu0798 0.15 +0.0 793,912 + Atu0798 0.15 -0.5 793,930 - Atu0798 0.16 +1.1 793,932 + Atu0798 0.17 +0.5 793,940 - Atu0798 0.17 -1.2 793,980 + Atu0798 0.21 +1.4 793,990 - Atu0798 0.22 +1.0 793,995 - Atu0798 0.22 +0.5 794,002 - Atu0798 0.23 +0.4 794,020 + Atu0798 0.25 +0.7 794,028 - Atu0798 0.25 -3.6 794,050 - Atu0798 0.27 +0.1 794,058 - Atu0798 0.28 -1.5 794,084 + Atu0798 0.30 -1.5 794,097 - Atu0798 0.32 +1.0 794,098 + Atu0798 0.32 -0.7 794,098 + Atu0798 0.32 -0.7 794,117 + Atu0798 0.33 -0.3 794,122 + Atu0798 0.34 +2.1 794,130 - Atu0798 0.35 -0.1 794,200 - Atu0798 0.41 -0.0 794,200 - Atu0798 0.41 +0.2 794,216 - Atu0798 0.42 +0.1 794,223 - Atu0798 0.43 +0.5 794,295 + Atu0798 0.49 -1.4 794,357 - Atu0798 0.55 +1.2 794,357 - Atu0798 0.55 +0.5 794,403 + Atu0798 0.59 +2.1 794,432 - Atu0798 0.62 -3.1 794,488 - Atu0798 0.67 +0.5 794,579 + Atu0798 0.75 +0.0 794,587 - Atu0798 0.76 +1.1 794,593 + Atu0798 0.76 -0.4 794,681 + Atu0798 0.84 +0.8 794,765 - -0.5 794,896 + -0.1 794,988 - -1.0 795,451 - +0.3 795,472 + -0.0 795,480 - +0.9 795,482 + +1.3 795,519 + +0.4 795,524 + -0.7 795,527 - -0.6 795,577 + -0.0 795,577 + -1.1
Or see this region's nucleotide sequence