Experiment: AgroPhage_F04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0595 and Atu8133 are separated by 170 nucleotides Atu8133 and Atu0597 are separated by 25 nucleotides Atu0597 and Atu0598 are separated by 218 nucleotides
Atu0595: Atu0595 - ABC transporter, nucleotide binding/ATPase protein, at 579,911 to 580,999
Atu0595
Atu8133: Atu8133 - hypothetical protein, at 581,170 to 581,589
Atu8133
Atu0597: Atu0597 - hypothetical protein, at 581,615 to 582,976
Atu0597
Atu0598: Atu0598 - phosphogluconate dehydratase, at 583,195 to 585,015
Atu0598
Position (kb) 581
582
583 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 580.735 kb on + strand, within Atu0595 at 580.743 kb on - strand, within Atu0595 at 580.743 kb on - strand, within Atu0595 at 580.743 kb on - strand, within Atu0595 at 580.743 kb on - strand, within Atu0595 at 580.743 kb on - strand, within Atu0595 at 580.871 kb on + strand, within Atu0595 at 580.885 kb on - strand, within Atu0595 at 580.951 kb on + strand at 581.098 kb on + strand at 581.106 kb on - strand at 581.106 kb on - strand at 581.106 kb on - strand at 581.106 kb on - strand at 581.135 kb on + strand at 581.137 kb on - strand at 581.137 kb on - strand at 581.140 kb on + strand at 581.141 kb on + strand at 581.148 kb on - strand at 581.174 kb on - strand at 581.181 kb on + strand at 581.221 kb on + strand, within Atu8133 at 581.338 kb on - strand, within Atu8133 at 581.403 kb on + strand, within Atu8133 at 581.520 kb on + strand, within Atu8133 at 581.545 kb on + strand, within Atu8133 at 581.551 kb on + strand at 581.604 kb on + strand at 581.604 kb on + strand at 581.611 kb on + strand at 581.612 kb on - strand at 581.662 kb on + strand at 581.772 kb on + strand, within Atu0597 at 581.879 kb on - strand, within Atu0597 at 582.002 kb on - strand, within Atu0597 at 582.121 kb on - strand, within Atu0597 at 582.126 kb on - strand, within Atu0597 at 582.202 kb on + strand, within Atu0597 at 582.239 kb on - strand, within Atu0597 at 582.261 kb on + strand, within Atu0597 at 582.297 kb on + strand, within Atu0597 at 582.352 kb on + strand, within Atu0597 at 582.355 kb on - strand, within Atu0597 at 582.396 kb on + strand, within Atu0597 at 582.526 kb on - strand, within Atu0597 at 582.669 kb on + strand, within Atu0597 at 582.828 kb on - strand, within Atu0597 at 582.860 kb on - strand at 582.889 kb on + strand at 582.949 kb on - strand at 582.991 kb on + strand at 582.991 kb on + strand at 582.999 kb on - strand at 583.045 kb on + strand at 583.160 kb on + strand at 583.551 kb on - strand, within Atu0598 at 583.620 kb on + strand, within Atu0598 at 583.809 kb on + strand, within Atu0598 at 583.817 kb on - strand, within Atu0598 at 583.817 kb on - strand, within Atu0598
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_F04 remove 580,735 + Atu0595 0.76 -0.4 580,743 - Atu0595 0.76 -0.4 580,743 - Atu0595 0.76 +0.8 580,743 - Atu0595 0.76 -0.1 580,743 - Atu0595 0.76 -0.7 580,743 - Atu0595 0.76 +0.5 580,871 + Atu0595 0.88 -1.1 580,885 - Atu0595 0.89 +0.7 580,951 + +0.0 581,098 + -1.1 581,106 - -0.4 581,106 - -0.6 581,106 - -0.8 581,106 - -0.1 581,135 + +0.0 581,137 - +1.3 581,137 - -1.2 581,140 + +0.9 581,141 + -0.3 581,148 - -0.6 581,174 - -0.0 581,181 + +0.0 581,221 + Atu8133 0.12 +0.7 581,338 - Atu8133 0.40 -1.2 581,403 + Atu8133 0.55 -2.0 581,520 + Atu8133 0.83 +0.3 581,545 + Atu8133 0.89 -0.1 581,551 + -0.4 581,604 + -1.1 581,604 + +2.3 581,611 + +0.7 581,612 - +3.0 581,662 + +0.1 581,772 + Atu0597 0.12 +2.1 581,879 - Atu0597 0.19 +0.4 582,002 - Atu0597 0.28 +1.1 582,121 - Atu0597 0.37 +0.7 582,126 - Atu0597 0.38 +0.8 582,202 + Atu0597 0.43 -0.4 582,239 - Atu0597 0.46 -1.5 582,261 + Atu0597 0.47 +0.6 582,297 + Atu0597 0.50 +0.7 582,352 + Atu0597 0.54 -0.7 582,355 - Atu0597 0.54 -1.1 582,396 + Atu0597 0.57 +2.4 582,526 - Atu0597 0.67 +0.4 582,669 + Atu0597 0.77 +0.3 582,828 - Atu0597 0.89 +0.3 582,860 - -0.3 582,889 + -0.1 582,949 - -0.3 582,991 + +0.2 582,991 + +2.6 582,999 - +1.4 583,045 + -1.6 583,160 + -0.1 583,551 - Atu0598 0.20 +0.8 583,620 + Atu0598 0.23 +0.3 583,809 + Atu0598 0.34 +0.2 583,817 - Atu0598 0.34 -0.3 583,817 - Atu0598 0.34 -1.0
Or see this region's nucleotide sequence