Experiment: AgroPhage_F04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0577 and Atu0578 overlap by 4 nucleotides Atu0578 and Atu0579 overlap by 10 nucleotides Atu0579 and Atu0580 are separated by 45 nucleotides Atu0580 and Atu0581 are separated by 157 nucleotides
Atu0577: Atu0577 - FLAF protein, at 562,858 to 563,202
Atu0577
Atu0578: Atu0578 - FlbT post-transcriptional regulator of flagellin, at 563,199 to 563,648
Atu0578
Atu0579: Atu0579 - hook formation protein, at 563,639 to 564,112
Atu0579
Atu0580: Atu0580 - flagellar biosynthetic protein, at 564,158 to 564,424
Atu0580
Atu0581: Atu0581 - flagellar biosynthesis protein, at 564,582 to 566,669
Atu0581
Position (kb) 564
565 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6 at 563.214 kb on - strand at 563.333 kb on + strand, within Atu0578 at 563.415 kb on + strand, within Atu0578 at 563.537 kb on + strand, within Atu0578 at 563.558 kb on + strand, within Atu0578 at 563.558 kb on + strand, within Atu0578 at 563.674 kb on + strand at 563.674 kb on + strand at 563.674 kb on + strand at 563.677 kb on - strand at 563.704 kb on + strand, within Atu0579 at 563.728 kb on + strand, within Atu0579 at 563.728 kb on - strand, within Atu0579 at 563.774 kb on + strand, within Atu0579 at 563.778 kb on + strand, within Atu0579 at 563.863 kb on + strand, within Atu0579 at 563.874 kb on + strand, within Atu0579 at 563.881 kb on + strand, within Atu0579 at 563.888 kb on + strand, within Atu0579 at 564.113 kb on - strand at 564.160 kb on + strand at 564.173 kb on - strand at 564.204 kb on - strand, within Atu0580 at 564.252 kb on - strand, within Atu0580 at 564.264 kb on + strand, within Atu0580 at 564.479 kb on - strand at 564.523 kb on + strand at 564.523 kb on + strand at 564.614 kb on + strand at 564.617 kb on - strand at 564.697 kb on + strand at 564.701 kb on + strand at 564.745 kb on + strand at 564.774 kb on + strand at 564.839 kb on - strand, within Atu0581 at 565.003 kb on - strand, within Atu0581 at 565.034 kb on + strand, within Atu0581 at 565.047 kb on - strand, within Atu0581 at 565.047 kb on - strand, within Atu0581 at 565.312 kb on - strand, within Atu0581 at 565.336 kb on + strand, within Atu0581
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_F04 remove 563,214 - +5.5 563,333 + Atu0578 0.30 +5.1 563,415 + Atu0578 0.48 +5.2 563,537 + Atu0578 0.75 +5.5 563,558 + Atu0578 0.80 +5.2 563,558 + Atu0578 0.80 +4.7 563,674 + +5.6 563,674 + +6.4 563,674 + +5.2 563,677 - +6.1 563,704 + Atu0579 0.14 +4.9 563,728 + Atu0579 0.19 +5.4 563,728 - Atu0579 0.19 +4.6 563,774 + Atu0579 0.28 +5.5 563,778 + Atu0579 0.29 +4.8 563,863 + Atu0579 0.47 +5.6 563,874 + Atu0579 0.50 +5.6 563,881 + Atu0579 0.51 +5.8 563,888 + Atu0579 0.53 +5.9 564,113 - +5.5 564,160 + +6.2 564,173 - +5.4 564,204 - Atu0580 0.17 +4.9 564,252 - Atu0580 0.35 +4.4 564,264 + Atu0580 0.40 +5.7 564,479 - +5.6 564,523 + +4.7 564,523 + +5.0 564,614 + +5.3 564,617 - +5.0 564,697 + +5.6 564,701 + +5.1 564,745 + +5.4 564,774 + +4.7 564,839 - Atu0581 0.12 +3.8 565,003 - Atu0581 0.20 +5.7 565,034 + Atu0581 0.22 +5.8 565,047 - Atu0581 0.22 +6.0 565,047 - Atu0581 0.22 +5.9 565,312 - Atu0581 0.35 +5.5 565,336 + Atu0581 0.36 +5.3
Or see this region's nucleotide sequence