Experiment: AgroPhage_F04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0550 and Atu0551 overlap by 4 nucleotides Atu0551 and Atu0552 are separated by 20 nucleotides Atu0552 and Atu0553 are separated by 18 nucleotides Atu0553 and Atu0554 overlap by 4 nucleotides Atu0554 and Atu0555 are separated by 3 nucleotides
Atu0550: Atu0550 - flagellar P-ring protein precursor, at 538,290 to 539,411
Atu0550
Atu0551: Atu0551 - flagellar protein FLGA precursor, at 539,408 to 539,896
Atu0551
Atu0552: Atu0552 - flagellar basal-body rod protein, at 539,917 to 540,705
Atu0552
Atu0553: Atu0553 - flagellar hook-basal body complex protein, at 540,724 to 541,062
Atu0553
Atu0554: Atu0554 - flagellar basal-body rod protein, at 541,059 to 541,478
Atu0554
Atu0555: Atu0555 - flagellar basal-body rod protein FlgB, at 541,482 to 541,874
Atu0555
Position (kb) 539
540
541 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6 at 538.917 kb on - strand, within Atu0550 at 538.946 kb on - strand, within Atu0550 at 538.984 kb on + strand, within Atu0550 at 538.984 kb on + strand, within Atu0550 at 538.992 kb on - strand, within Atu0550 at 538.992 kb on - strand, within Atu0550 at 539.017 kb on + strand, within Atu0550 at 539.025 kb on - strand, within Atu0550 at 539.075 kb on + strand, within Atu0550 at 539.076 kb on - strand, within Atu0550 at 539.087 kb on + strand, within Atu0550 at 539.095 kb on - strand, within Atu0550 at 539.146 kb on + strand, within Atu0550 at 539.146 kb on + strand, within Atu0550 at 539.154 kb on - strand, within Atu0550 at 539.154 kb on - strand, within Atu0550 at 539.197 kb on + strand, within Atu0550 at 539.205 kb on - strand, within Atu0550 at 539.207 kb on - strand, within Atu0550 at 539.255 kb on - strand, within Atu0550 at 539.262 kb on - strand, within Atu0550 at 539.329 kb on + strand at 539.337 kb on - strand at 539.361 kb on + strand at 539.366 kb on + strand at 539.366 kb on + strand at 539.384 kb on - strand at 539.430 kb on + strand at 539.438 kb on + strand at 539.446 kb on - strand at 539.480 kb on + strand, within Atu0551 at 539.572 kb on + strand, within Atu0551 at 539.580 kb on - strand, within Atu0551 at 539.675 kb on + strand, within Atu0551 at 539.758 kb on + strand, within Atu0551 at 539.852 kb on + strand at 539.874 kb on + strand at 539.899 kb on - strand at 539.962 kb on + strand at 540.037 kb on + strand, within Atu0552 at 540.059 kb on + strand, within Atu0552 at 540.243 kb on - strand, within Atu0552 at 540.265 kb on - strand, within Atu0552 at 540.369 kb on + strand, within Atu0552 at 540.411 kb on - strand, within Atu0552 at 540.411 kb on - strand, within Atu0552 at 540.417 kb on + strand, within Atu0552 at 540.461 kb on + strand, within Atu0552 at 540.467 kb on - strand, within Atu0552 at 540.541 kb on + strand, within Atu0552 at 540.583 kb on + strand, within Atu0552 at 540.617 kb on + strand, within Atu0552 at 540.617 kb on + strand, within Atu0552 at 540.625 kb on - strand, within Atu0552 at 540.648 kb on + strand at 540.698 kb on + strand at 540.722 kb on + strand at 540.724 kb on - strand at 540.744 kb on + strand at 540.744 kb on + strand at 540.865 kb on - strand, within Atu0553 at 540.938 kb on + strand, within Atu0553 at 540.942 kb on - strand, within Atu0553 at 540.951 kb on + strand, within Atu0553 at 540.964 kb on - strand, within Atu0553 at 540.972 kb on - strand, within Atu0553 at 540.994 kb on - strand, within Atu0553 at 541.037 kb on - strand at 541.119 kb on + strand, within Atu0554 at 541.300 kb on + strand, within Atu0554 at 541.316 kb on + strand, within Atu0554 at 541.319 kb on - strand, within Atu0554 at 541.347 kb on + strand, within Atu0554 at 541.360 kb on - strand, within Atu0554 at 541.417 kb on + strand, within Atu0554 at 541.423 kb on - strand, within Atu0554 at 541.423 kb on - strand, within Atu0554 at 541.425 kb on - strand, within Atu0554 at 541.487 kb on + strand at 541.519 kb on + strand at 541.536 kb on - strand, within Atu0555 at 541.567 kb on + strand, within Atu0555 at 541.570 kb on - strand, within Atu0555 at 541.691 kb on + strand, within Atu0555 at 541.693 kb on - strand, within Atu0555 at 541.693 kb on - strand, within Atu0555 at 541.699 kb on - strand, within Atu0555 at 541.699 kb on - strand, within Atu0555 at 541.704 kb on - strand, within Atu0555
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_F04 remove 538,917 - Atu0550 0.56 +5.9 538,946 - Atu0550 0.58 +5.7 538,984 + Atu0550 0.62 +5.7 538,984 + Atu0550 0.62 +5.7 538,992 - Atu0550 0.63 +5.6 538,992 - Atu0550 0.63 +6.3 539,017 + Atu0550 0.65 +5.3 539,025 - Atu0550 0.66 +5.4 539,075 + Atu0550 0.70 +5.0 539,076 - Atu0550 0.70 +4.9 539,087 + Atu0550 0.71 +5.9 539,095 - Atu0550 0.72 +5.7 539,146 + Atu0550 0.76 +5.6 539,146 + Atu0550 0.76 +5.9 539,154 - Atu0550 0.77 +5.4 539,154 - Atu0550 0.77 +5.2 539,197 + Atu0550 0.81 +5.4 539,205 - Atu0550 0.82 +5.1 539,207 - Atu0550 0.82 +5.7 539,255 - Atu0550 0.86 +4.8 539,262 - Atu0550 0.87 +5.5 539,329 + +5.3 539,337 - +5.5 539,361 + +5.6 539,366 + +5.7 539,366 + +6.6 539,384 - +6.1 539,430 + +5.7 539,438 + +5.7 539,446 - +5.8 539,480 + Atu0551 0.15 +5.2 539,572 + Atu0551 0.34 +5.0 539,580 - Atu0551 0.35 +5.9 539,675 + Atu0551 0.55 +5.7 539,758 + Atu0551 0.72 +5.9 539,852 + +2.7 539,874 + +5.9 539,899 - +4.4 539,962 + +5.6 540,037 + Atu0552 0.15 +5.4 540,059 + Atu0552 0.18 +5.3 540,243 - Atu0552 0.41 +5.1 540,265 - Atu0552 0.44 +4.1 540,369 + Atu0552 0.57 +6.2 540,411 - Atu0552 0.63 +5.2 540,411 - Atu0552 0.63 +4.3 540,417 + Atu0552 0.63 +5.5 540,461 + Atu0552 0.69 +5.2 540,467 - Atu0552 0.70 +5.6 540,541 + Atu0552 0.79 +5.3 540,583 + Atu0552 0.84 +5.0 540,617 + Atu0552 0.89 +4.8 540,617 + Atu0552 0.89 +5.6 540,625 - Atu0552 0.90 +5.5 540,648 + +4.1 540,698 + +4.3 540,722 + +5.8 540,724 - +5.8 540,744 + +4.1 540,744 + +5.8 540,865 - Atu0553 0.42 +5.9 540,938 + Atu0553 0.63 +5.8 540,942 - Atu0553 0.64 +5.2 540,951 + Atu0553 0.67 +5.7 540,964 - Atu0553 0.71 +5.8 540,972 - Atu0553 0.73 +5.1 540,994 - Atu0553 0.80 +5.3 541,037 - +5.4 541,119 + Atu0554 0.14 +5.5 541,300 + Atu0554 0.57 +5.2 541,316 + Atu0554 0.61 +5.5 541,319 - Atu0554 0.62 +5.5 541,347 + Atu0554 0.69 +5.3 541,360 - Atu0554 0.72 +6.1 541,417 + Atu0554 0.85 +5.8 541,423 - Atu0554 0.87 +5.6 541,423 - Atu0554 0.87 +4.8 541,425 - Atu0554 0.87 +5.4 541,487 + +5.5 541,519 + +6.0 541,536 - Atu0555 0.14 +4.9 541,567 + Atu0555 0.22 +5.8 541,570 - Atu0555 0.22 +6.1 541,691 + Atu0555 0.53 +5.6 541,693 - Atu0555 0.54 +5.7 541,693 - Atu0555 0.54 +4.9 541,699 - Atu0555 0.55 +5.7 541,699 - Atu0555 0.55 +5.6 541,704 - Atu0555 0.56 +5.9
Or see this region's nucleotide sequence