Experiment: AgroPhage_F04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0261 and Atu0262 are separated by 0 nucleotides Atu0262 and Atu0263 are separated by 1 nucleotides
Atu0261: Atu0261 - transcriptional regulator, LysR family, at 259,145 to 260,035
Atu0261
Atu0262: Atu0262 - acetyltransferase, at 260,036 to 260,479
Atu0262
Atu0263: Atu0263 - oxidoreductase, at 260,481 to 261,431
Atu0263
Position (kb) 260
261 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 259.223 kb on + strand at 259.274 kb on - strand, within Atu0261 at 259.286 kb on - strand, within Atu0261 at 259.432 kb on + strand, within Atu0261 at 259.439 kb on + strand, within Atu0261 at 259.473 kb on + strand, within Atu0261 at 259.492 kb on + strand, within Atu0261 at 259.750 kb on - strand, within Atu0261 at 259.750 kb on - strand, within Atu0261 at 259.828 kb on - strand, within Atu0261 at 259.835 kb on - strand, within Atu0261 at 259.862 kb on - strand, within Atu0261 at 259.889 kb on + strand, within Atu0261 at 259.933 kb on - strand, within Atu0261 at 259.991 kb on - strand at 259.997 kb on - strand at 260.135 kb on - strand, within Atu0262 at 260.142 kb on - strand, within Atu0262 at 260.152 kb on - strand, within Atu0262 at 260.152 kb on - strand, within Atu0262 at 260.152 kb on - strand, within Atu0262 at 260.250 kb on + strand, within Atu0262 at 260.258 kb on - strand, within Atu0262 at 260.494 kb on - strand at 260.494 kb on - strand at 260.496 kb on + strand at 260.505 kb on + strand at 260.533 kb on - strand at 260.614 kb on + strand, within Atu0263 at 260.614 kb on + strand, within Atu0263 at 260.622 kb on - strand, within Atu0263 at 260.622 kb on - strand, within Atu0263 at 260.644 kb on + strand, within Atu0263 at 260.644 kb on + strand, within Atu0263 at 260.649 kb on + strand, within Atu0263 at 260.657 kb on - strand, within Atu0263 at 260.657 kb on - strand, within Atu0263 at 260.870 kb on + strand, within Atu0263 at 260.878 kb on - strand, within Atu0263 at 260.891 kb on - strand, within Atu0263 at 261.279 kb on - strand, within Atu0263 at 261.332 kb on - strand, within Atu0263 at 261.355 kb on + strand at 261.418 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_F04 remove 259,223 + +0.7 259,274 - Atu0261 0.14 +0.3 259,286 - Atu0261 0.16 +1.7 259,432 + Atu0261 0.32 -1.0 259,439 + Atu0261 0.33 -0.0 259,473 + Atu0261 0.37 +0.4 259,492 + Atu0261 0.39 -0.6 259,750 - Atu0261 0.68 -0.2 259,750 - Atu0261 0.68 +0.5 259,828 - Atu0261 0.77 -0.2 259,835 - Atu0261 0.77 -0.8 259,862 - Atu0261 0.80 -0.3 259,889 + Atu0261 0.84 -0.1 259,933 - Atu0261 0.88 -0.4 259,991 - -1.2 259,997 - -3.0 260,135 - Atu0262 0.22 +0.5 260,142 - Atu0262 0.24 -0.5 260,152 - Atu0262 0.26 +2.5 260,152 - Atu0262 0.26 -0.7 260,152 - Atu0262 0.26 +0.3 260,250 + Atu0262 0.48 +0.3 260,258 - Atu0262 0.50 +1.1 260,494 - -0.2 260,494 - -1.3 260,496 + -0.5 260,505 + +0.3 260,533 - +0.4 260,614 + Atu0263 0.14 +0.5 260,614 + Atu0263 0.14 -0.9 260,622 - Atu0263 0.15 +3.3 260,622 - Atu0263 0.15 +0.4 260,644 + Atu0263 0.17 +1.0 260,644 + Atu0263 0.17 +0.4 260,649 + Atu0263 0.18 +0.5 260,657 - Atu0263 0.19 +0.8 260,657 - Atu0263 0.19 -1.1 260,870 + Atu0263 0.41 +0.0 260,878 - Atu0263 0.42 -0.3 260,891 - Atu0263 0.43 -1.3 261,279 - Atu0263 0.84 -1.5 261,332 - Atu0263 0.89 +1.1 261,355 + -1.1 261,418 - -1.8
Or see this region's nucleotide sequence