Experiment: AgroPhage_F04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0260 and Atu0261 are separated by 116 nucleotides Atu0261 and Atu0262 are separated by 0 nucleotides Atu0262 and Atu0263 are separated by 1 nucleotides
Atu0260: Atu0260 - aldo-keto reductase, at 258,027 to 259,028
Atu0260
Atu0261: Atu0261 - transcriptional regulator, LysR family, at 259,145 to 260,035
Atu0261
Atu0262: Atu0262 - acetyltransferase, at 260,036 to 260,479
Atu0262
Atu0263: Atu0263 - oxidoreductase, at 260,481 to 261,431
Atu0263
Position (kb) 259
260
261 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 258.178 kb on + strand, within Atu0260 at 258.185 kb on + strand, within Atu0260 at 258.252 kb on + strand, within Atu0260 at 258.262 kb on + strand, within Atu0260 at 258.277 kb on + strand, within Atu0260 at 258.285 kb on - strand, within Atu0260 at 258.421 kb on - strand, within Atu0260 at 258.421 kb on - strand, within Atu0260 at 258.442 kb on + strand, within Atu0260 at 258.450 kb on - strand, within Atu0260 at 258.510 kb on + strand, within Atu0260 at 258.510 kb on + strand, within Atu0260 at 258.512 kb on + strand, within Atu0260 at 258.518 kb on - strand, within Atu0260 at 258.635 kb on + strand, within Atu0260 at 258.640 kb on + strand, within Atu0260 at 258.657 kb on - strand, within Atu0260 at 258.748 kb on - strand, within Atu0260 at 258.752 kb on - strand, within Atu0260 at 258.859 kb on + strand, within Atu0260 at 258.859 kb on + strand, within Atu0260 at 258.859 kb on + strand, within Atu0260 at 258.874 kb on - strand, within Atu0260 at 258.917 kb on - strand, within Atu0260 at 258.955 kb on - strand at 259.001 kb on + strand at 259.223 kb on + strand at 259.274 kb on - strand, within Atu0261 at 259.286 kb on - strand, within Atu0261 at 259.432 kb on + strand, within Atu0261 at 259.439 kb on + strand, within Atu0261 at 259.473 kb on + strand, within Atu0261 at 259.492 kb on + strand, within Atu0261 at 259.750 kb on - strand, within Atu0261 at 259.750 kb on - strand, within Atu0261 at 259.828 kb on - strand, within Atu0261 at 259.835 kb on - strand, within Atu0261 at 259.862 kb on - strand, within Atu0261 at 259.889 kb on + strand, within Atu0261 at 259.933 kb on - strand, within Atu0261 at 259.991 kb on - strand at 259.997 kb on - strand at 260.135 kb on - strand, within Atu0262 at 260.142 kb on - strand, within Atu0262 at 260.152 kb on - strand, within Atu0262 at 260.152 kb on - strand, within Atu0262 at 260.152 kb on - strand, within Atu0262 at 260.250 kb on + strand, within Atu0262 at 260.258 kb on - strand, within Atu0262 at 260.494 kb on - strand at 260.494 kb on - strand at 260.496 kb on + strand at 260.505 kb on + strand at 260.533 kb on - strand at 260.614 kb on + strand, within Atu0263 at 260.614 kb on + strand, within Atu0263 at 260.622 kb on - strand, within Atu0263 at 260.622 kb on - strand, within Atu0263 at 260.644 kb on + strand, within Atu0263 at 260.644 kb on + strand, within Atu0263 at 260.649 kb on + strand, within Atu0263 at 260.657 kb on - strand, within Atu0263 at 260.657 kb on - strand, within Atu0263 at 260.870 kb on + strand, within Atu0263 at 260.878 kb on - strand, within Atu0263 at 260.891 kb on - strand, within Atu0263
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_F04 remove 258,178 + Atu0260 0.15 +0.2 258,185 + Atu0260 0.16 +1.0 258,252 + Atu0260 0.22 -1.5 258,262 + Atu0260 0.23 -0.4 258,277 + Atu0260 0.25 -0.4 258,285 - Atu0260 0.26 +0.2 258,421 - Atu0260 0.39 -0.6 258,421 - Atu0260 0.39 -1.2 258,442 + Atu0260 0.41 +0.9 258,450 - Atu0260 0.42 -0.6 258,510 + Atu0260 0.48 -0.3 258,510 + Atu0260 0.48 -0.0 258,512 + Atu0260 0.48 -0.8 258,518 - Atu0260 0.49 -0.4 258,635 + Atu0260 0.61 -1.1 258,640 + Atu0260 0.61 -0.1 258,657 - Atu0260 0.63 +0.3 258,748 - Atu0260 0.72 -0.2 258,752 - Atu0260 0.72 -0.9 258,859 + Atu0260 0.83 +0.1 258,859 + Atu0260 0.83 +0.4 258,859 + Atu0260 0.83 -2.9 258,874 - Atu0260 0.85 -2.2 258,917 - Atu0260 0.89 +0.5 258,955 - -0.6 259,001 + -1.0 259,223 + +0.7 259,274 - Atu0261 0.14 +0.3 259,286 - Atu0261 0.16 +1.7 259,432 + Atu0261 0.32 -1.0 259,439 + Atu0261 0.33 -0.0 259,473 + Atu0261 0.37 +0.4 259,492 + Atu0261 0.39 -0.6 259,750 - Atu0261 0.68 -0.2 259,750 - Atu0261 0.68 +0.5 259,828 - Atu0261 0.77 -0.2 259,835 - Atu0261 0.77 -0.8 259,862 - Atu0261 0.80 -0.3 259,889 + Atu0261 0.84 -0.1 259,933 - Atu0261 0.88 -0.4 259,991 - -1.2 259,997 - -3.0 260,135 - Atu0262 0.22 +0.5 260,142 - Atu0262 0.24 -0.5 260,152 - Atu0262 0.26 +2.5 260,152 - Atu0262 0.26 -0.7 260,152 - Atu0262 0.26 +0.3 260,250 + Atu0262 0.48 +0.3 260,258 - Atu0262 0.50 +1.1 260,494 - -0.2 260,494 - -1.3 260,496 + -0.5 260,505 + +0.3 260,533 - +0.4 260,614 + Atu0263 0.14 +0.5 260,614 + Atu0263 0.14 -0.9 260,622 - Atu0263 0.15 +3.3 260,622 - Atu0263 0.15 +0.4 260,644 + Atu0263 0.17 +1.0 260,644 + Atu0263 0.17 +0.4 260,649 + Atu0263 0.18 +0.5 260,657 - Atu0263 0.19 +0.8 260,657 - Atu0263 0.19 -1.1 260,870 + Atu0263 0.41 +0.0 260,878 - Atu0263 0.42 -0.3 260,891 - Atu0263 0.43 -1.3
Or see this region's nucleotide sequence