Experiment: AgroPhage_F03
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3312 and Atu3313 are separated by 13 nucleotides Atu3313 and Atu3314 are separated by 14 nucleotides Atu3314 and Atu3315 overlap by 4 nucleotides Atu3315 and Atu3316 are separated by 1 nucleotides
Atu3312: Atu3312 - hypothetical protein, at 343,105 to 344,067
Atu3312
Atu3313: Atu3313 - hypothetical protein, at 344,081 to 344,584
Atu3313
Atu3314: Atu3314 - cellulose synthase, at 344,599 to 346,536
Atu3314
Atu3315: Atu3315 - UDP-glucose 4-epimerase, at 346,533 to 347,516
Atu3315
Atu3316: Atu3316 - dTDP-glucose 4-6-dehydratase, at 347,518 to 348,540
Atu3316
Position (kb) 344
345
346
347 Strain fitness (log2 ratio) -2
-1
0
1 at 343.678 kb on + strand, within Atu3312 at 343.735 kb on - strand, within Atu3312 at 343.750 kb on + strand, within Atu3312 at 343.758 kb on - strand, within Atu3312 at 343.758 kb on - strand, within Atu3312 at 343.779 kb on - strand, within Atu3312 at 343.784 kb on - strand, within Atu3312 at 343.834 kb on - strand, within Atu3312 at 343.858 kb on - strand, within Atu3312 at 343.858 kb on - strand, within Atu3312 at 343.965 kb on - strand, within Atu3312 at 344.079 kb on + strand at 344.085 kb on - strand at 344.198 kb on + strand, within Atu3313 at 344.212 kb on + strand, within Atu3313 at 344.302 kb on - strand, within Atu3313 at 344.311 kb on - strand, within Atu3313 at 344.339 kb on - strand, within Atu3313 at 344.362 kb on - strand, within Atu3313 at 344.548 kb on - strand at 344.582 kb on + strand at 344.669 kb on + strand at 344.683 kb on + strand at 344.691 kb on - strand at 344.717 kb on - strand at 344.721 kb on + strand at 344.744 kb on - strand at 344.773 kb on - strand at 344.797 kb on + strand, within Atu3314 at 344.840 kb on + strand, within Atu3314 at 344.840 kb on + strand, within Atu3314 at 344.843 kb on - strand, within Atu3314 at 344.900 kb on + strand, within Atu3314 at 344.960 kb on + strand, within Atu3314 at 345.058 kb on + strand, within Atu3314 at 345.133 kb on - strand, within Atu3314 at 345.228 kb on + strand, within Atu3314 at 345.276 kb on - strand, within Atu3314 at 345.366 kb on + strand, within Atu3314 at 345.366 kb on + strand, within Atu3314 at 345.374 kb on - strand, within Atu3314 at 345.374 kb on - strand, within Atu3314 at 345.406 kb on + strand, within Atu3314 at 345.513 kb on + strand, within Atu3314 at 345.637 kb on + strand, within Atu3314 at 345.653 kb on - strand, within Atu3314 at 345.669 kb on + strand, within Atu3314 at 345.683 kb on + strand, within Atu3314 at 345.695 kb on + strand, within Atu3314 at 345.701 kb on + strand, within Atu3314 at 345.815 kb on + strand, within Atu3314 at 345.820 kb on + strand, within Atu3314 at 345.820 kb on + strand, within Atu3314 at 345.828 kb on - strand, within Atu3314 at 345.828 kb on - strand, within Atu3314 at 345.828 kb on - strand, within Atu3314 at 345.828 kb on - strand, within Atu3314 at 345.889 kb on - strand, within Atu3314 at 345.940 kb on - strand, within Atu3314 at 345.968 kb on + strand, within Atu3314 at 345.992 kb on + strand, within Atu3314 at 346.090 kb on + strand, within Atu3314 at 346.091 kb on - strand, within Atu3314 at 346.100 kb on - strand, within Atu3314 at 346.100 kb on - strand, within Atu3314 at 346.102 kb on + strand, within Atu3314 at 346.160 kb on + strand, within Atu3314 at 346.160 kb on + strand, within Atu3314 at 346.185 kb on - strand, within Atu3314 at 346.188 kb on + strand, within Atu3314 at 346.196 kb on - strand, within Atu3314 at 346.197 kb on - strand, within Atu3314 at 346.228 kb on - strand, within Atu3314 at 346.237 kb on - strand, within Atu3314 at 346.265 kb on + strand, within Atu3314 at 346.302 kb on + strand, within Atu3314 at 346.313 kb on + strand, within Atu3314 at 346.321 kb on - strand, within Atu3314 at 346.403 kb on - strand at 346.404 kb on - strand at 346.539 kb on - strand at 346.625 kb on - strand at 346.625 kb on - strand at 346.630 kb on + strand at 346.632 kb on + strand, within Atu3315 at 346.829 kb on + strand, within Atu3315 at 346.950 kb on + strand, within Atu3315 at 346.950 kb on + strand, within Atu3315 at 347.055 kb on - strand, within Atu3315 at 347.098 kb on - strand, within Atu3315 at 347.195 kb on + strand, within Atu3315 at 347.286 kb on - strand, within Atu3315 at 347.308 kb on - strand, within Atu3315 at 347.466 kb on - strand at 347.519 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_F03 remove 343,678 + Atu3312 0.60 +0.4 343,735 - Atu3312 0.65 -0.3 343,750 + Atu3312 0.67 -0.4 343,758 - Atu3312 0.68 -0.7 343,758 - Atu3312 0.68 -0.8 343,779 - Atu3312 0.70 -0.6 343,784 - Atu3312 0.71 -0.0 343,834 - Atu3312 0.76 +0.3 343,858 - Atu3312 0.78 +1.0 343,858 - Atu3312 0.78 -1.2 343,965 - Atu3312 0.89 -0.1 344,079 + -2.7 344,085 - +0.7 344,198 + Atu3313 0.23 -2.3 344,212 + Atu3313 0.26 -0.8 344,302 - Atu3313 0.44 +0.2 344,311 - Atu3313 0.46 +0.2 344,339 - Atu3313 0.51 +0.6 344,362 - Atu3313 0.56 -0.5 344,548 - +0.0 344,582 + +0.1 344,669 + -0.1 344,683 + -2.1 344,691 - -0.1 344,717 - -0.3 344,721 + +0.3 344,744 - +0.3 344,773 - +1.0 344,797 + Atu3314 0.10 -0.2 344,840 + Atu3314 0.12 -1.2 344,840 + Atu3314 0.12 -0.1 344,843 - Atu3314 0.13 -0.1 344,900 + Atu3314 0.16 +1.0 344,960 + Atu3314 0.19 -0.3 345,058 + Atu3314 0.24 -2.0 345,133 - Atu3314 0.28 -1.3 345,228 + Atu3314 0.32 +0.5 345,276 - Atu3314 0.35 -0.2 345,366 + Atu3314 0.40 -0.1 345,366 + Atu3314 0.40 -1.6 345,374 - Atu3314 0.40 -1.7 345,374 - Atu3314 0.40 -0.3 345,406 + Atu3314 0.42 -2.2 345,513 + Atu3314 0.47 +0.0 345,637 + Atu3314 0.54 +0.2 345,653 - Atu3314 0.54 -0.0 345,669 + Atu3314 0.55 +0.7 345,683 + Atu3314 0.56 +0.2 345,695 + Atu3314 0.57 -0.2 345,701 + Atu3314 0.57 -1.2 345,815 + Atu3314 0.63 -0.3 345,820 + Atu3314 0.63 -0.4 345,820 + Atu3314 0.63 -0.2 345,828 - Atu3314 0.63 -0.5 345,828 - Atu3314 0.63 +0.1 345,828 - Atu3314 0.63 -1.2 345,828 - Atu3314 0.63 -0.2 345,889 - Atu3314 0.67 -0.4 345,940 - Atu3314 0.69 +0.4 345,968 + Atu3314 0.71 +0.1 345,992 + Atu3314 0.72 +0.1 346,090 + Atu3314 0.77 -1.5 346,091 - Atu3314 0.77 -0.9 346,100 - Atu3314 0.77 -1.6 346,100 - Atu3314 0.77 -0.3 346,102 + Atu3314 0.78 -1.0 346,160 + Atu3314 0.81 +0.1 346,160 + Atu3314 0.81 +0.6 346,185 - Atu3314 0.82 -1.0 346,188 + Atu3314 0.82 -1.3 346,196 - Atu3314 0.82 +0.2 346,197 - Atu3314 0.82 -2.0 346,228 - Atu3314 0.84 -0.1 346,237 - Atu3314 0.85 -0.6 346,265 + Atu3314 0.86 -0.5 346,302 + Atu3314 0.88 -0.9 346,313 + Atu3314 0.88 +0.5 346,321 - Atu3314 0.89 -1.0 346,403 - -0.4 346,404 - -0.5 346,539 - -0.4 346,625 - -0.6 346,625 - -1.6 346,630 + +0.1 346,632 + Atu3315 0.10 +0.1 346,829 + Atu3315 0.30 +0.9 346,950 + Atu3315 0.42 +0.0 346,950 + Atu3315 0.42 +0.1 347,055 - Atu3315 0.53 +1.1 347,098 - Atu3315 0.57 -0.2 347,195 + Atu3315 0.67 +0.1 347,286 - Atu3315 0.77 -0.7 347,308 - Atu3315 0.79 -0.1 347,466 - -1.3 347,519 + -0.2
Or see this region's nucleotide sequence