Experiment: AgroPhage_F03
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0392 and Atu0393 overlap by 1 nucleotides Atu0393 and Atu0394 are separated by 42 nucleotides Atu0394 and Atu0395 are separated by 64 nucleotides
Atu0392: Atu0392 - ABC transporter, membrane spanning protein, at 385,136 to 386,062
Atu0392
Atu0393: Atu0393 - ABC transporter, membrane spanning protein, at 386,062 to 386,883
Atu0393
Atu0394: Atu0394 - ABC transporter, substrate binding protein (sugar), at 386,926 to 388,218
Atu0394
Atu0395: Atu0395 - hypothetical protein, at 388,283 to 389,083
Atu0395
Position (kb) 386
387
388
389 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 385.927 kb on + strand, within Atu0392 at 385.934 kb on - strand, within Atu0392 at 386.006 kb on + strand at 386.014 kb on - strand at 386.096 kb on + strand at 386.151 kb on - strand, within Atu0393 at 386.192 kb on + strand, within Atu0393 at 386.284 kb on - strand, within Atu0393 at 386.333 kb on + strand, within Atu0393 at 386.339 kb on - strand, within Atu0393 at 386.505 kb on - strand, within Atu0393 at 386.676 kb on - strand, within Atu0393 at 386.677 kb on + strand, within Atu0393 at 386.769 kb on + strand, within Atu0393 at 386.815 kb on + strand at 386.858 kb on + strand at 386.866 kb on - strand at 386.888 kb on + strand at 386.955 kb on - strand at 386.957 kb on + strand at 386.965 kb on - strand at 387.092 kb on + strand, within Atu0394 at 387.150 kb on - strand, within Atu0394 at 387.154 kb on + strand, within Atu0394 at 387.225 kb on + strand, within Atu0394 at 387.228 kb on - strand, within Atu0394 at 387.233 kb on + strand, within Atu0394 at 387.233 kb on + strand, within Atu0394 at 387.233 kb on + strand, within Atu0394 at 387.241 kb on - strand, within Atu0394 at 387.241 kb on - strand, within Atu0394 at 387.279 kb on + strand, within Atu0394 at 387.325 kb on - strand, within Atu0394 at 387.420 kb on + strand, within Atu0394 at 387.428 kb on - strand, within Atu0394 at 387.428 kb on - strand, within Atu0394 at 387.455 kb on + strand, within Atu0394 at 387.455 kb on + strand, within Atu0394 at 387.544 kb on - strand, within Atu0394 at 387.548 kb on + strand, within Atu0394 at 387.579 kb on - strand, within Atu0394 at 387.600 kb on + strand, within Atu0394 at 387.700 kb on - strand, within Atu0394 at 387.703 kb on - strand, within Atu0394 at 387.714 kb on - strand, within Atu0394 at 387.724 kb on + strand, within Atu0394 at 387.724 kb on + strand, within Atu0394 at 387.727 kb on - strand, within Atu0394 at 387.732 kb on - strand, within Atu0394 at 387.741 kb on - strand, within Atu0394 at 387.852 kb on - strand, within Atu0394 at 387.881 kb on - strand, within Atu0394 at 387.947 kb on + strand, within Atu0394 at 387.997 kb on + strand, within Atu0394 at 388.015 kb on + strand, within Atu0394 at 388.046 kb on - strand, within Atu0394 at 388.144 kb on + strand at 388.152 kb on + strand at 388.192 kb on + strand at 388.197 kb on + strand at 388.197 kb on + strand at 388.197 kb on + strand at 388.205 kb on - strand at 388.205 kb on - strand at 388.205 kb on - strand at 388.448 kb on + strand, within Atu0395 at 388.455 kb on + strand, within Atu0395 at 388.578 kb on + strand, within Atu0395 at 388.578 kb on + strand, within Atu0395 at 388.583 kb on + strand, within Atu0395 at 388.583 kb on + strand, within Atu0395 at 388.583 kb on + strand, within Atu0395 at 388.586 kb on - strand, within Atu0395 at 388.640 kb on - strand, within Atu0395 at 388.684 kb on + strand, within Atu0395 at 388.704 kb on - strand, within Atu0395 at 388.719 kb on + strand, within Atu0395 at 388.750 kb on + strand, within Atu0395 at 388.823 kb on + strand, within Atu0395 at 388.833 kb on + strand, within Atu0395 at 388.861 kb on - strand, within Atu0395 at 388.898 kb on + strand, within Atu0395 at 388.910 kb on + strand, within Atu0395 at 388.915 kb on + strand, within Atu0395 at 388.918 kb on - strand, within Atu0395 at 388.923 kb on - strand, within Atu0395 at 388.945 kb on - strand, within Atu0395 at 388.959 kb on - strand, within Atu0395 at 388.971 kb on - strand, within Atu0395 at 389.006 kb on - strand at 389.030 kb on - strand at 389.073 kb on - strand at 389.083 kb on - strand at 389.169 kb on + strand at 389.187 kb on - strand at 389.189 kb on + strand at 389.196 kb on + strand at 389.205 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_F03 remove 385,927 + Atu0392 0.85 +0.0 385,934 - Atu0392 0.86 -1.7 386,006 + +0.5 386,014 - +0.1 386,096 + -0.6 386,151 - Atu0393 0.11 +1.4 386,192 + Atu0393 0.16 +0.2 386,284 - Atu0393 0.27 -0.0 386,333 + Atu0393 0.33 -0.3 386,339 - Atu0393 0.34 +0.6 386,505 - Atu0393 0.54 -1.3 386,676 - Atu0393 0.75 -0.6 386,677 + Atu0393 0.75 -1.6 386,769 + Atu0393 0.86 +0.8 386,815 + +0.8 386,858 + +0.3 386,866 - +0.7 386,888 + +0.1 386,955 - +1.7 386,957 + +0.2 386,965 - +1.1 387,092 + Atu0394 0.13 -0.7 387,150 - Atu0394 0.17 -3.1 387,154 + Atu0394 0.18 -0.3 387,225 + Atu0394 0.23 -0.7 387,228 - Atu0394 0.23 -1.0 387,233 + Atu0394 0.24 -0.7 387,233 + Atu0394 0.24 -0.3 387,233 + Atu0394 0.24 -0.8 387,241 - Atu0394 0.24 +2.5 387,241 - Atu0394 0.24 -1.9 387,279 + Atu0394 0.27 +0.2 387,325 - Atu0394 0.31 +0.5 387,420 + Atu0394 0.38 -0.0 387,428 - Atu0394 0.39 -1.0 387,428 - Atu0394 0.39 -0.2 387,455 + Atu0394 0.41 -1.2 387,455 + Atu0394 0.41 -0.5 387,544 - Atu0394 0.48 -0.2 387,548 + Atu0394 0.48 -1.5 387,579 - Atu0394 0.51 -1.9 387,600 + Atu0394 0.52 -1.0 387,700 - Atu0394 0.60 +0.6 387,703 - Atu0394 0.60 -0.2 387,714 - Atu0394 0.61 -0.0 387,724 + Atu0394 0.62 -0.8 387,724 + Atu0394 0.62 +2.6 387,727 - Atu0394 0.62 +0.1 387,732 - Atu0394 0.62 -1.2 387,741 - Atu0394 0.63 +0.1 387,852 - Atu0394 0.72 +0.7 387,881 - Atu0394 0.74 -0.1 387,947 + Atu0394 0.79 -0.6 387,997 + Atu0394 0.83 -0.3 388,015 + Atu0394 0.84 -1.5 388,046 - Atu0394 0.87 +0.1 388,144 + +0.2 388,152 + +1.6 388,192 + +0.2 388,197 + -0.8 388,197 + -0.8 388,197 + +0.0 388,205 - -0.7 388,205 - -1.8 388,205 - +0.1 388,448 + Atu0395 0.21 -0.5 388,455 + Atu0395 0.21 -0.4 388,578 + Atu0395 0.37 -2.0 388,578 + Atu0395 0.37 +0.5 388,583 + Atu0395 0.37 -0.5 388,583 + Atu0395 0.37 +0.4 388,583 + Atu0395 0.37 -0.3 388,586 - Atu0395 0.38 -0.7 388,640 - Atu0395 0.45 -1.4 388,684 + Atu0395 0.50 +0.1 388,704 - Atu0395 0.53 -1.5 388,719 + Atu0395 0.54 -0.4 388,750 + Atu0395 0.58 -0.3 388,823 + Atu0395 0.67 -0.8 388,833 + Atu0395 0.69 -0.8 388,861 - Atu0395 0.72 -0.6 388,898 + Atu0395 0.77 +0.5 388,910 + Atu0395 0.78 +0.9 388,915 + Atu0395 0.79 -1.4 388,918 - Atu0395 0.79 -2.9 388,923 - Atu0395 0.80 -1.0 388,945 - Atu0395 0.83 -0.2 388,959 - Atu0395 0.84 -0.9 388,971 - Atu0395 0.86 -0.4 389,006 - -0.3 389,030 - -0.0 389,073 - +0.6 389,083 - -0.6 389,169 + +0.1 389,187 - -0.2 389,189 + +0.1 389,196 + +1.1 389,205 - +0.0
Or see this region's nucleotide sequence