Strain Fitness in Agrobacterium fabrum C58 around Atu0115

Experiment: AgroPhage_F03

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0114 and Atu0115 overlap by 1 nucleotidesAtu0115 and Atu0116 are separated by 569 nucleotides Atu0114: Atu0114 - two component response regulator, at 119,383 to 120,729 Atu0114 Atu0115: Atu0115 - hypothetical protein, at 120,729 to 120,932 Atu0115 Atu0116: Atu0116 - hypothetical protein, at 121,502 to 121,912 Atu0116 Position (kb) 120 121Strain fitness (log2 ratio) -3 -2 -1 0 1at 119.792 kb on + strand, within Atu0114at 119.832 kb on + strand, within Atu0114at 119.835 kb on - strand, within Atu0114at 119.921 kb on + strand, within Atu0114at 119.923 kb on - strand, within Atu0114at 120.077 kb on + strand, within Atu0114at 120.098 kb on + strand, within Atu0114at 120.125 kb on - strand, within Atu0114at 120.273 kb on + strand, within Atu0114at 120.291 kb on - strand, within Atu0114at 120.405 kb on + strand, within Atu0114at 120.415 kb on - strand, within Atu0114at 120.821 kb on - strand, within Atu0115at 120.945 kb on - strandat 120.999 kb on - strandat 121.001 kb on + strandat 121.009 kb on - strandat 121.009 kb on - strandat 121.034 kb on + strandat 121.063 kb on + strandat 121.104 kb on + strandat 121.191 kb on + strandat 121.191 kb on + strandat 121.199 kb on - strandat 121.199 kb on - strandat 121.260 kb on - strandat 121.363 kb on - strandat 121.381 kb on + strandat 121.381 kb on + strandat 121.426 kb on - strandat 121.466 kb on - strandat 121.476 kb on - strandat 121.499 kb on + strandat 121.507 kb on - strandat 121.525 kb on + strandat 121.565 kb on - strand, within Atu0116at 121.581 kb on - strand, within Atu0116at 121.677 kb on + strand, within Atu0116at 121.713 kb on - strand, within Atu0116at 121.735 kb on + strand, within Atu0116at 121.743 kb on - strand, within Atu0116at 121.771 kb on - strand, within Atu0116

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Per-strain Table

Position Strand Gene LocusTag Fraction AgroPhage_F03
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119,792 + Atu0114 0.30 -0.3
119,832 + Atu0114 0.33 -0.2
119,835 - Atu0114 0.34 +0.2
119,921 + Atu0114 0.40 +1.6
119,923 - Atu0114 0.40 +0.4
120,077 + Atu0114 0.52 -1.3
120,098 + Atu0114 0.53 -1.8
120,125 - Atu0114 0.55 -0.5
120,273 + Atu0114 0.66 -0.1
120,291 - Atu0114 0.67 -0.3
120,405 + Atu0114 0.76 +0.1
120,415 - Atu0114 0.77 +0.5
120,821 - Atu0115 0.45 -2.9
120,945 - -0.9
120,999 - +1.0
121,001 + -0.5
121,009 - +1.0
121,009 - +1.2
121,034 + -0.2
121,063 + +0.1
121,104 + +0.5
121,191 + -3.4
121,191 + -0.8
121,199 - +1.6
121,199 - -1.0
121,260 - +1.5
121,363 - -0.6
121,381 + -0.4
121,381 + -1.1
121,426 - +0.8
121,466 - +1.0
121,476 - -0.4
121,499 + -0.3
121,507 - +1.2
121,525 + -1.0
121,565 - Atu0116 0.15 +0.5
121,581 - Atu0116 0.19 +0.9
121,677 + Atu0116 0.43 -0.2
121,713 - Atu0116 0.51 +0.4
121,735 + Atu0116 0.57 +1.2
121,743 - Atu0116 0.59 +0.1
121,771 - Atu0116 0.65 -0.2

Or see this region's nucleotide sequence