Strain Fitness in Agrobacterium fabrum C58 around Atu5464

Experiment: AgroPhage_E10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5462 and Atu5463 overlap by 4 nucleotidesAtu5463 and Atu5464 overlap by 4 nucleotidesAtu5464 and Atu5465 are separated by 3 nucleotidesAtu5465 and Atu5466 are separated by 55 nucleotides Atu5462: Atu5462 - ABC transporter nucleotide binding/ATPase, at 454,632 to 455,714 Atu5462 Atu5463: Atu5463 - putative UDP-glucose 4-epimerase, at 455,711 to 456,694 Atu5463 Atu5464: Atu5464 - IclR family transcriptional regulator, at 456,691 to 458,373 Atu5464 Atu5465: Atu5465 - 3-oxoacyl-ACP reductase, at 458,377 to 459,138 Atu5465 Atu5466: Atu5466 - potassium uptake protein, at 459,194 to 461,107 Atu5466 Position (kb) 456 457 458 459Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 455.716 kb on - strandat 455.793 kb on + strandat 455.801 kb on - strandat 455.853 kb on + strand, within Atu5463at 455.907 kb on + strand, within Atu5463at 456.000 kb on + strand, within Atu5463at 456.056 kb on + strand, within Atu5463at 456.079 kb on - strand, within Atu5463at 456.085 kb on + strand, within Atu5463at 456.120 kb on - strand, within Atu5463at 456.207 kb on - strand, within Atu5463at 456.212 kb on - strand, within Atu5463at 456.267 kb on + strand, within Atu5463at 456.326 kb on + strand, within Atu5463at 456.410 kb on - strand, within Atu5463at 456.422 kb on - strand, within Atu5463at 456.426 kb on + strand, within Atu5463at 456.436 kb on - strand, within Atu5463at 456.448 kb on + strand, within Atu5463at 456.726 kb on + strandat 456.733 kb on + strandat 456.734 kb on + strandat 456.808 kb on - strandat 456.843 kb on - strandat 456.926 kb on + strand, within Atu5464at 456.935 kb on - strand, within Atu5464at 457.001 kb on + strand, within Atu5464at 457.090 kb on - strand, within Atu5464at 457.099 kb on + strand, within Atu5464at 457.206 kb on - strand, within Atu5464at 457.206 kb on - strand, within Atu5464at 457.259 kb on - strand, within Atu5464at 457.315 kb on + strand, within Atu5464at 457.323 kb on - strand, within Atu5464at 457.323 kb on - strand, within Atu5464at 457.461 kb on - strand, within Atu5464at 457.520 kb on - strand, within Atu5464at 457.524 kb on + strand, within Atu5464at 457.532 kb on - strand, within Atu5464at 457.579 kb on + strand, within Atu5464at 457.586 kb on - strand, within Atu5464at 457.604 kb on + strand, within Atu5464at 457.606 kb on + strand, within Atu5464at 457.671 kb on - strand, within Atu5464at 457.729 kb on - strand, within Atu5464at 457.759 kb on + strand, within Atu5464at 457.759 kb on + strand, within Atu5464at 457.786 kb on + strand, within Atu5464at 457.868 kb on - strand, within Atu5464at 457.874 kb on - strand, within Atu5464at 457.980 kb on + strand, within Atu5464at 458.005 kb on - strand, within Atu5464at 458.093 kb on + strand, within Atu5464at 458.114 kb on + strand, within Atu5464at 458.224 kb on - strandat 458.250 kb on + strandat 458.282 kb on + strandat 458.282 kb on + strandat 458.369 kb on - strandat 458.436 kb on - strandat 458.436 kb on - strandat 458.499 kb on - strand, within Atu5465at 458.501 kb on + strand, within Atu5465at 458.501 kb on + strand, within Atu5465at 458.501 kb on + strand, within Atu5465at 458.501 kb on + strand, within Atu5465at 458.509 kb on - strand, within Atu5465at 458.509 kb on - strand, within Atu5465at 458.558 kb on - strand, within Atu5465at 458.558 kb on - strand, within Atu5465at 458.606 kb on + strand, within Atu5465at 458.606 kb on + strand, within Atu5465at 458.608 kb on - strand, within Atu5465at 458.670 kb on + strand, within Atu5465at 458.678 kb on - strand, within Atu5465at 458.741 kb on - strand, within Atu5465at 458.741 kb on - strand, within Atu5465at 458.793 kb on - strand, within Atu5465at 458.799 kb on + strand, within Atu5465at 458.823 kb on + strand, within Atu5465at 458.831 kb on - strand, within Atu5465at 458.925 kb on + strand, within Atu5465at 458.925 kb on + strand, within Atu5465at 458.933 kb on - strand, within Atu5465at 458.949 kb on + strand, within Atu5465at 458.954 kb on + strand, within Atu5465at 458.969 kb on - strand, within Atu5465at 459.004 kb on - strand, within Atu5465at 459.067 kb on + strandat 459.075 kb on - strandat 459.095 kb on + strandat 459.206 kb on - strandat 459.253 kb on - strandat 459.295 kb on - strandat 459.346 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction AgroPhage_E10
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455,716 - +0.5
455,793 + +0.5
455,801 - -0.5
455,853 + Atu5463 0.14 +0.2
455,907 + Atu5463 0.20 +2.1
456,000 + Atu5463 0.29 -0.2
456,056 + Atu5463 0.35 +0.8
456,079 - Atu5463 0.37 +0.3
456,085 + Atu5463 0.38 -1.0
456,120 - Atu5463 0.42 +0.9
456,207 - Atu5463 0.50 +0.2
456,212 - Atu5463 0.51 +1.2
456,267 + Atu5463 0.57 +0.6
456,326 + Atu5463 0.62 -2.6
456,410 - Atu5463 0.71 +1.7
456,422 - Atu5463 0.72 -1.0
456,426 + Atu5463 0.73 +2.8
456,436 - Atu5463 0.74 +0.4
456,448 + Atu5463 0.75 +2.6
456,726 + -0.0
456,733 + +2.4
456,734 + -0.9
456,808 - -0.0
456,843 - -1.3
456,926 + Atu5464 0.14 -0.5
456,935 - Atu5464 0.14 +1.2
457,001 + Atu5464 0.18 +0.0
457,090 - Atu5464 0.24 +0.1
457,099 + Atu5464 0.24 -0.0
457,206 - Atu5464 0.31 -1.8
457,206 - Atu5464 0.31 -0.8
457,259 - Atu5464 0.34 -0.4
457,315 + Atu5464 0.37 -0.7
457,323 - Atu5464 0.38 +0.5
457,323 - Atu5464 0.38 -1.1
457,461 - Atu5464 0.46 +1.0
457,520 - Atu5464 0.49 +0.6
457,524 + Atu5464 0.49 +1.5
457,532 - Atu5464 0.50 +0.2
457,579 + Atu5464 0.53 +0.3
457,586 - Atu5464 0.53 +0.0
457,604 + Atu5464 0.54 -0.4
457,606 + Atu5464 0.54 -0.0
457,671 - Atu5464 0.58 -0.5
457,729 - Atu5464 0.62 -1.5
457,759 + Atu5464 0.63 -1.1
457,759 + Atu5464 0.63 -0.2
457,786 + Atu5464 0.65 -2.0
457,868 - Atu5464 0.70 +0.2
457,874 - Atu5464 0.70 -0.2
457,980 + Atu5464 0.77 +2.0
458,005 - Atu5464 0.78 +0.4
458,093 + Atu5464 0.83 +1.3
458,114 + Atu5464 0.85 +0.5
458,224 - +0.4
458,250 + +0.8
458,282 + +3.9
458,282 + -0.0
458,369 - -0.3
458,436 - +0.1
458,436 - +0.4
458,499 - Atu5465 0.16 +0.4
458,501 + Atu5465 0.16 +0.9
458,501 + Atu5465 0.16 +1.4
458,501 + Atu5465 0.16 -1.1
458,501 + Atu5465 0.16 +0.8
458,509 - Atu5465 0.17 -0.6
458,509 - Atu5465 0.17 +0.0
458,558 - Atu5465 0.24 -2.7
458,558 - Atu5465 0.24 -1.3
458,606 + Atu5465 0.30 +0.1
458,606 + Atu5465 0.30 +1.1
458,608 - Atu5465 0.30 -1.0
458,670 + Atu5465 0.38 +1.0
458,678 - Atu5465 0.40 +1.4
458,741 - Atu5465 0.48 +1.6
458,741 - Atu5465 0.48 +0.3
458,793 - Atu5465 0.55 +1.1
458,799 + Atu5465 0.55 -1.1
458,823 + Atu5465 0.59 +0.3
458,831 - Atu5465 0.60 +1.1
458,925 + Atu5465 0.72 +0.2
458,925 + Atu5465 0.72 -0.6
458,933 - Atu5465 0.73 -0.2
458,949 + Atu5465 0.75 -1.0
458,954 + Atu5465 0.76 +0.8
458,969 - Atu5465 0.78 -0.5
459,004 - Atu5465 0.82 +0.0
459,067 + +0.4
459,075 - -0.2
459,095 + +0.3
459,206 - -0.5
459,253 - -2.2
459,295 - +0.6
459,346 + +0.0

Or see this region's nucleotide sequence