Experiment: AgroPhage_E10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3472 and Atu3473 are separated by 3 nucleotides Atu3473 and Atu3474 are separated by 44 nucleotides
Atu3472: Atu3472 - 2-oxoisovalerate dehydrogenase subunit beta, at 519,185 to 520,198
Atu3472
Atu3473: Atu3473 - 2-oxoisovalerate dehydrogenase subunit alpha, at 520,202 to 521,440
Atu3473
Atu3474: Atu3474 - acyl-CoA dehydrogenase, at 521,485 to 522,612
Atu3474
Position (kb) 520
521
522 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 519.419 kb on - strand, within Atu3472 at 519.485 kb on - strand, within Atu3472 at 519.699 kb on + strand, within Atu3472 at 519.700 kb on + strand, within Atu3472 at 519.774 kb on - strand, within Atu3472 at 519.930 kb on - strand, within Atu3472 at 519.984 kb on - strand, within Atu3472 at 520.078 kb on - strand, within Atu3472 at 520.149 kb on + strand at 520.381 kb on + strand, within Atu3473 at 520.402 kb on + strand, within Atu3473 at 520.403 kb on - strand, within Atu3473 at 520.461 kb on + strand, within Atu3473 at 520.501 kb on - strand, within Atu3473 at 520.534 kb on + strand, within Atu3473 at 520.542 kb on - strand, within Atu3473 at 520.547 kb on - strand, within Atu3473 at 520.572 kb on - strand, within Atu3473 at 520.583 kb on + strand, within Atu3473 at 520.583 kb on + strand, within Atu3473 at 520.591 kb on - strand, within Atu3473 at 520.591 kb on - strand, within Atu3473 at 520.629 kb on - strand, within Atu3473 at 520.739 kb on - strand, within Atu3473 at 520.931 kb on - strand, within Atu3473 at 520.979 kb on - strand, within Atu3473 at 521.134 kb on - strand, within Atu3473 at 521.226 kb on + strand, within Atu3473 at 521.282 kb on + strand, within Atu3473 at 521.290 kb on - strand, within Atu3473 at 521.300 kb on + strand, within Atu3473 at 521.334 kb on + strand at 521.342 kb on - strand at 521.459 kb on + strand at 521.463 kb on + strand at 521.464 kb on + strand at 521.467 kb on - strand at 521.509 kb on + strand at 521.528 kb on - strand at 521.566 kb on - strand at 521.694 kb on - strand, within Atu3474 at 521.699 kb on - strand, within Atu3474 at 521.746 kb on - strand, within Atu3474 at 521.803 kb on + strand, within Atu3474 at 521.838 kb on - strand, within Atu3474 at 521.848 kb on - strand, within Atu3474 at 521.929 kb on - strand, within Atu3474 at 521.946 kb on + strand, within Atu3474 at 521.954 kb on - strand, within Atu3474 at 522.029 kb on + strand, within Atu3474 at 522.034 kb on - strand, within Atu3474 at 522.146 kb on - strand, within Atu3474 at 522.156 kb on + strand, within Atu3474 at 522.164 kb on - strand, within Atu3474 at 522.174 kb on - strand, within Atu3474 at 522.174 kb on - strand, within Atu3474 at 522.193 kb on - strand, within Atu3474 at 522.203 kb on + strand, within Atu3474 at 522.210 kb on - strand, within Atu3474 at 522.244 kb on - strand, within Atu3474
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_E10 remove 519,419 - Atu3472 0.23 +0.5 519,485 - Atu3472 0.30 +3.3 519,699 + Atu3472 0.51 +2.1 519,700 + Atu3472 0.51 +0.6 519,774 - Atu3472 0.58 -1.3 519,930 - Atu3472 0.73 +1.3 519,984 - Atu3472 0.79 -0.3 520,078 - Atu3472 0.88 +1.4 520,149 + -0.9 520,381 + Atu3473 0.14 +0.3 520,402 + Atu3473 0.16 +0.3 520,403 - Atu3473 0.16 +2.6 520,461 + Atu3473 0.21 -0.8 520,501 - Atu3473 0.24 -0.5 520,534 + Atu3473 0.27 -0.1 520,542 - Atu3473 0.27 +0.3 520,547 - Atu3473 0.28 +1.6 520,572 - Atu3473 0.30 +2.8 520,583 + Atu3473 0.31 +0.2 520,583 + Atu3473 0.31 +1.0 520,591 - Atu3473 0.31 +0.1 520,591 - Atu3473 0.31 -0.1 520,629 - Atu3473 0.34 -1.2 520,739 - Atu3473 0.43 -2.1 520,931 - Atu3473 0.59 +0.1 520,979 - Atu3473 0.63 +0.7 521,134 - Atu3473 0.75 -0.9 521,226 + Atu3473 0.83 -0.8 521,282 + Atu3473 0.87 -1.0 521,290 - Atu3473 0.88 +0.8 521,300 + Atu3473 0.89 -0.4 521,334 + -2.0 521,342 - +1.7 521,459 + +0.2 521,463 + -0.9 521,464 + +0.6 521,467 - -0.0 521,509 + +2.3 521,528 - -0.3 521,566 - -1.2 521,694 - Atu3474 0.19 -0.1 521,699 - Atu3474 0.19 +2.2 521,746 - Atu3474 0.23 +0.2 521,803 + Atu3474 0.28 -1.3 521,838 - Atu3474 0.31 -0.1 521,848 - Atu3474 0.32 +2.7 521,929 - Atu3474 0.39 +1.0 521,946 + Atu3474 0.41 +0.2 521,954 - Atu3474 0.42 -0.8 522,029 + Atu3474 0.48 +1.9 522,034 - Atu3474 0.49 -1.5 522,146 - Atu3474 0.59 -0.7 522,156 + Atu3474 0.59 +0.8 522,164 - Atu3474 0.60 +0.2 522,174 - Atu3474 0.61 +0.0 522,174 - Atu3474 0.61 +1.7 522,193 - Atu3474 0.63 +0.3 522,203 + Atu3474 0.64 +1.2 522,210 - Atu3474 0.64 +1.3 522,244 - Atu3474 0.67 +0.1
Or see this region's nucleotide sequence