Experiment: AgroPhage_E10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3396 and Atu3397 are separated by 443 nucleotides Atu3397 and Atu3398 are separated by 202 nucleotides
Atu3396: Atu3396 - ABC transporter substrate-binding protein, at 439,935 to 440,966
Atu3396
Atu3397: Atu3397 - hypothetical protein, at 441,410 to 442,285
Atu3397
Atu3398: Atu3398 - acetylornithine deacetylase, at 442,488 to 443,612
Atu3398
Position (kb) 441
442
443 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 440.467 kb on - strand, within Atu3396 at 440.486 kb on + strand, within Atu3396 at 440.494 kb on - strand, within Atu3396 at 440.531 kb on + strand, within Atu3396 at 440.628 kb on - strand, within Atu3396 at 440.635 kb on - strand, within Atu3396 at 440.635 kb on - strand, within Atu3396 at 440.694 kb on - strand, within Atu3396 at 440.710 kb on - strand, within Atu3396 at 440.710 kb on - strand, within Atu3396 at 440.728 kb on + strand, within Atu3396 at 440.795 kb on + strand, within Atu3396 at 440.801 kb on + strand, within Atu3396 at 440.823 kb on - strand, within Atu3396 at 440.869 kb on - strand at 440.908 kb on + strand at 441.038 kb on + strand at 441.056 kb on - strand at 441.059 kb on - strand at 441.170 kb on + strand at 441.200 kb on + strand at 441.225 kb on - strand at 441.308 kb on + strand at 441.421 kb on - strand at 441.423 kb on + strand at 441.565 kb on - strand, within Atu3397 at 441.571 kb on + strand, within Atu3397 at 441.708 kb on + strand, within Atu3397 at 441.726 kb on - strand, within Atu3397 at 441.729 kb on + strand, within Atu3397 at 441.788 kb on + strand, within Atu3397 at 441.796 kb on - strand, within Atu3397 at 441.796 kb on - strand, within Atu3397 at 441.860 kb on - strand, within Atu3397 at 441.919 kb on + strand, within Atu3397 at 441.926 kb on - strand, within Atu3397 at 441.965 kb on - strand, within Atu3397 at 442.050 kb on - strand, within Atu3397 at 442.093 kb on - strand, within Atu3397 at 442.161 kb on - strand, within Atu3397 at 442.190 kb on + strand, within Atu3397 at 442.269 kb on + strand at 442.277 kb on - strand at 442.294 kb on + strand at 442.302 kb on - strand at 442.327 kb on + strand at 442.396 kb on + strand at 442.424 kb on + strand at 442.442 kb on - strand at 442.552 kb on - strand at 442.588 kb on + strand at 442.594 kb on + strand at 442.619 kb on + strand, within Atu3398 at 442.674 kb on + strand, within Atu3398 at 442.714 kb on - strand, within Atu3398 at 442.729 kb on + strand, within Atu3398 at 442.729 kb on + strand, within Atu3398 at 442.820 kb on - strand, within Atu3398 at 442.853 kb on - strand, within Atu3398 at 442.918 kb on - strand, within Atu3398 at 442.935 kb on - strand, within Atu3398 at 442.980 kb on - strand, within Atu3398 at 443.155 kb on + strand, within Atu3398 at 443.165 kb on + strand, within Atu3398 at 443.165 kb on + strand, within Atu3398 at 443.178 kb on - strand, within Atu3398 at 443.197 kb on + strand, within Atu3398 at 443.285 kb on + strand, within Atu3398 at 443.285 kb on + strand, within Atu3398
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_E10 remove 440,467 - Atu3396 0.52 +0.2 440,486 + Atu3396 0.53 -1.5 440,494 - Atu3396 0.54 -1.2 440,531 + Atu3396 0.58 -0.3 440,628 - Atu3396 0.67 +0.2 440,635 - Atu3396 0.68 +0.4 440,635 - Atu3396 0.68 +1.3 440,694 - Atu3396 0.74 -1.7 440,710 - Atu3396 0.75 -0.1 440,710 - Atu3396 0.75 +0.9 440,728 + Atu3396 0.77 -0.2 440,795 + Atu3396 0.83 -0.4 440,801 + Atu3396 0.84 +1.5 440,823 - Atu3396 0.86 +1.4 440,869 - +0.3 440,908 + -0.5 441,038 + -0.4 441,056 - +0.3 441,059 - -1.2 441,170 + -0.4 441,200 + +0.5 441,225 - +1.6 441,308 + -1.2 441,421 - +3.5 441,423 + -0.3 441,565 - Atu3397 0.18 +1.9 441,571 + Atu3397 0.18 +0.6 441,708 + Atu3397 0.34 +1.5 441,726 - Atu3397 0.36 +1.0 441,729 + Atu3397 0.36 +0.6 441,788 + Atu3397 0.43 +0.4 441,796 - Atu3397 0.44 +0.2 441,796 - Atu3397 0.44 -0.1 441,860 - Atu3397 0.51 +0.4 441,919 + Atu3397 0.58 -2.6 441,926 - Atu3397 0.59 -1.6 441,965 - Atu3397 0.63 -0.8 442,050 - Atu3397 0.73 -0.4 442,093 - Atu3397 0.78 -1.0 442,161 - Atu3397 0.86 +2.3 442,190 + Atu3397 0.89 +0.9 442,269 + -0.6 442,277 - +1.5 442,294 + -0.3 442,302 - +0.7 442,327 + -0.5 442,396 + +1.4 442,424 + +1.1 442,442 - +0.2 442,552 - -1.0 442,588 + -2.7 442,594 + +1.2 442,619 + Atu3398 0.12 -0.6 442,674 + Atu3398 0.17 +0.0 442,714 - Atu3398 0.20 +1.2 442,729 + Atu3398 0.21 +1.7 442,729 + Atu3398 0.21 +0.6 442,820 - Atu3398 0.30 +0.8 442,853 - Atu3398 0.32 +0.5 442,918 - Atu3398 0.38 +0.9 442,935 - Atu3398 0.40 -0.6 442,980 - Atu3398 0.44 +1.3 443,155 + Atu3398 0.59 +1.6 443,165 + Atu3398 0.60 -1.5 443,165 + Atu3398 0.60 -0.6 443,178 - Atu3398 0.61 -0.5 443,197 + Atu3398 0.63 -1.8 443,285 + Atu3398 0.71 +0.9 443,285 + Atu3398 0.71 -1.4
Or see this region's nucleotide sequence