Experiment: AgroPhage_E10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3266 and Atu3267 are separated by 1 nucleotides Atu3267 and Atu3268 overlap by 1 nucleotides
Atu3266: Atu3266 - dihydroorotase, at 284,917 to 286,140
Atu3266
Atu3267: Atu3267 - dipeptide ABC transporter permease, at 286,142 to 287,017
Atu3267
Atu3268: Atu3268 - dipeptide ABC transporter permease, at 287,017 to 287,925
Atu3268
Position (kb) 286
287
288 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 285.329 kb on - strand, within Atu3266 at 285.334 kb on + strand, within Atu3266 at 285.335 kb on - strand, within Atu3266 at 285.381 kb on - strand, within Atu3266 at 285.457 kb on + strand, within Atu3266 at 285.465 kb on - strand, within Atu3266 at 285.476 kb on - strand, within Atu3266 at 285.532 kb on + strand, within Atu3266 at 285.613 kb on + strand, within Atu3266 at 285.621 kb on + strand, within Atu3266 at 285.702 kb on + strand, within Atu3266 at 285.710 kb on - strand, within Atu3266 at 285.763 kb on - strand, within Atu3266 at 285.923 kb on - strand, within Atu3266 at 285.993 kb on - strand, within Atu3266 at 286.095 kb on - strand at 286.123 kb on - strand at 286.138 kb on - strand at 286.149 kb on + strand at 286.159 kb on + strand at 286.159 kb on + strand at 286.161 kb on + strand at 286.167 kb on - strand at 286.167 kb on - strand at 286.167 kb on - strand at 286.167 kb on - strand at 286.178 kb on - strand at 286.328 kb on - strand, within Atu3267 at 286.417 kb on + strand, within Atu3267 at 286.436 kb on + strand, within Atu3267 at 286.498 kb on + strand, within Atu3267 at 286.780 kb on - strand, within Atu3267 at 286.900 kb on + strand, within Atu3267 at 286.964 kb on + strand at 287.028 kb on + strand at 287.142 kb on - strand, within Atu3268 at 287.385 kb on + strand, within Atu3268 at 287.508 kb on + strand, within Atu3268 at 287.680 kb on + strand, within Atu3268 at 287.688 kb on + strand, within Atu3268 at 287.688 kb on - strand, within Atu3268 at 287.688 kb on - strand, within Atu3268 at 287.696 kb on - strand, within Atu3268 at 287.753 kb on + strand, within Atu3268 at 287.772 kb on + strand, within Atu3268 at 287.792 kb on - strand, within Atu3268 at 287.797 kb on - strand, within Atu3268 at 287.880 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_E10 remove 285,329 - Atu3266 0.34 -0.2 285,334 + Atu3266 0.34 +0.7 285,335 - Atu3266 0.34 +0.6 285,381 - Atu3266 0.38 -0.1 285,457 + Atu3266 0.44 -1.3 285,465 - Atu3266 0.45 +0.5 285,476 - Atu3266 0.46 -0.0 285,532 + Atu3266 0.50 +0.3 285,613 + Atu3266 0.57 +0.4 285,621 + Atu3266 0.58 +0.2 285,702 + Atu3266 0.64 +0.1 285,710 - Atu3266 0.65 +0.5 285,763 - Atu3266 0.69 -2.2 285,923 - Atu3266 0.82 -2.2 285,993 - Atu3266 0.88 -0.6 286,095 - +0.5 286,123 - +0.1 286,138 - -1.0 286,149 + -0.4 286,159 + -0.5 286,159 + +0.5 286,161 + +0.3 286,167 - +0.7 286,167 - +0.4 286,167 - -0.3 286,167 - -2.4 286,178 - +0.6 286,328 - Atu3267 0.21 +0.3 286,417 + Atu3267 0.31 +1.5 286,436 + Atu3267 0.34 -0.2 286,498 + Atu3267 0.41 +2.1 286,780 - Atu3267 0.73 +1.5 286,900 + Atu3267 0.87 -0.5 286,964 + -1.1 287,028 + +1.5 287,142 - Atu3268 0.14 +0.8 287,385 + Atu3268 0.40 -1.2 287,508 + Atu3268 0.54 -0.2 287,680 + Atu3268 0.73 -1.8 287,688 + Atu3268 0.74 +0.4 287,688 - Atu3268 0.74 +2.5 287,688 - Atu3268 0.74 +1.1 287,696 - Atu3268 0.75 -0.8 287,753 + Atu3268 0.81 +0.0 287,772 + Atu3268 0.83 +2.3 287,792 - Atu3268 0.85 -0.2 287,797 - Atu3268 0.86 +0.2 287,880 + +3.6
Or see this region's nucleotide sequence