Experiment: AgroPhage_E10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0961 and Atu0962 are separated by 283 nucleotides Atu0962 and Atu8141 are separated by 334 nucleotides Atu8141 and Atu0964 are separated by 60 nucleotides
Atu0961: Atu0961 - hypothetical protein, at 950,076 to 950,690
Atu0961
Atu0962: Atu0962 - hypothetical protein, at 950,974 to 951,378
Atu0962
Atu8141: Atu8141 - hypothetical protein, at 951,713 to 952,294
Atu8141
Atu0964: Atu0964 - hypothetical protein, at 952,355 to 952,993
Atu0964
Position (kb) 950
951
952 Strain fitness (log2 ratio) -2
-1
0
1
2 at 950.161 kb on + strand, within Atu0961 at 950.291 kb on + strand, within Atu0961 at 950.301 kb on + strand, within Atu0961 at 950.405 kb on - strand, within Atu0961 at 950.429 kb on + strand, within Atu0961 at 950.462 kb on + strand, within Atu0961 at 950.613 kb on + strand, within Atu0961 at 950.621 kb on - strand, within Atu0961 at 950.740 kb on - strand at 950.756 kb on - strand at 950.916 kb on + strand at 950.924 kb on - strand at 950.924 kb on - strand at 950.924 kb on - strand at 950.924 kb on - strand at 950.931 kb on + strand at 951.027 kb on - strand, within Atu0962 at 951.037 kb on - strand, within Atu0962 at 951.054 kb on - strand, within Atu0962 at 951.056 kb on + strand, within Atu0962 at 951.056 kb on + strand, within Atu0962 at 951.056 kb on + strand, within Atu0962 at 951.064 kb on - strand, within Atu0962 at 951.116 kb on - strand, within Atu0962 at 951.145 kb on + strand, within Atu0962 at 951.145 kb on + strand, within Atu0962 at 951.186 kb on + strand, within Atu0962 at 951.210 kb on - strand, within Atu0962 at 951.253 kb on - strand, within Atu0962 at 951.289 kb on - strand, within Atu0962 at 951.332 kb on - strand, within Atu0962 at 951.332 kb on - strand, within Atu0962 at 951.377 kb on - strand at 951.406 kb on + strand at 951.447 kb on + strand at 951.503 kb on + strand at 951.503 kb on + strand at 951.504 kb on + strand at 951.529 kb on - strand at 951.549 kb on + strand at 951.583 kb on + strand at 951.641 kb on - strand at 951.810 kb on - strand, within Atu8141 at 951.810 kb on - strand, within Atu8141 at 951.810 kb on - strand, within Atu8141 at 951.812 kb on + strand, within Atu8141 at 951.820 kb on - strand, within Atu8141 at 951.862 kb on - strand, within Atu8141 at 951.959 kb on + strand, within Atu8141 at 952.036 kb on + strand, within Atu8141 at 952.041 kb on + strand, within Atu8141 at 952.044 kb on - strand, within Atu8141 at 952.088 kb on - strand, within Atu8141 at 952.098 kb on - strand, within Atu8141 at 952.145 kb on + strand, within Atu8141 at 952.163 kb on + strand, within Atu8141 at 952.171 kb on - strand, within Atu8141 at 952.248 kb on + strand at 952.315 kb on + strand at 952.322 kb on - strand at 952.328 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_E10 remove 950,161 + Atu0961 0.14 -0.8 950,291 + Atu0961 0.35 -0.4 950,301 + Atu0961 0.37 -2.1 950,405 - Atu0961 0.53 +0.2 950,429 + Atu0961 0.57 -0.7 950,462 + Atu0961 0.63 -0.1 950,613 + Atu0961 0.87 -2.0 950,621 - Atu0961 0.89 +1.9 950,740 - -0.6 950,756 - +0.2 950,916 + -1.6 950,924 - -0.0 950,924 - +1.7 950,924 - -0.2 950,924 - +1.5 950,931 + +0.4 951,027 - Atu0962 0.13 +2.1 951,037 - Atu0962 0.16 +0.7 951,054 - Atu0962 0.20 +0.9 951,056 + Atu0962 0.20 -0.0 951,056 + Atu0962 0.20 +1.5 951,056 + Atu0962 0.20 +2.1 951,064 - Atu0962 0.22 +0.5 951,116 - Atu0962 0.35 +1.0 951,145 + Atu0962 0.42 -1.2 951,145 + Atu0962 0.42 -0.6 951,186 + Atu0962 0.52 +0.4 951,210 - Atu0962 0.58 -0.8 951,253 - Atu0962 0.69 +0.9 951,289 - Atu0962 0.78 +2.4 951,332 - Atu0962 0.88 -0.1 951,332 - Atu0962 0.88 +0.4 951,377 - +1.8 951,406 + +0.4 951,447 + +0.2 951,503 + +0.1 951,503 + -0.3 951,504 + +0.9 951,529 - +0.9 951,549 + -1.7 951,583 + -1.7 951,641 - -1.5 951,810 - Atu8141 0.17 +0.1 951,810 - Atu8141 0.17 -0.4 951,810 - Atu8141 0.17 -0.9 951,812 + Atu8141 0.17 -0.0 951,820 - Atu8141 0.18 -1.5 951,862 - Atu8141 0.26 +0.3 951,959 + Atu8141 0.42 -1.0 952,036 + Atu8141 0.55 +0.1 952,041 + Atu8141 0.56 -0.6 952,044 - Atu8141 0.57 -1.0 952,088 - Atu8141 0.64 -0.7 952,098 - Atu8141 0.66 +0.5 952,145 + Atu8141 0.74 +0.5 952,163 + Atu8141 0.77 +0.9 952,171 - Atu8141 0.79 -0.0 952,248 + -1.0 952,315 + -0.8 952,322 - +1.2 952,328 - -0.2
Or see this region's nucleotide sequence