Experiment: AgroPhage_E10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0728 and Atu0730 are separated by 222 nucleotides Atu0730 and Atu0731 are separated by 60 nucleotides Atu0731 and Atu0732 are separated by 209 nucleotides
Atu0728: Atu0728 - hypothetical protein, at 728,682 to 729,143
Atu0728
Atu0730: Atu0730 - hypothetical protein, at 729,366 to 729,890
Atu0730
Atu0731: Atu0731 - divalent cation transporter, at 729,951 to 730,946
Atu0731
Atu0732: Atu0732 - acyl-CoA dehydrogenase, at 731,156 to 732,940
Atu0732
Position (kb) 729
730
731 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 729.023 kb on - strand, within Atu0728 at 729.103 kb on - strand at 729.202 kb on + strand at 729.249 kb on + strand at 729.527 kb on - strand, within Atu0730 at 729.624 kb on - strand, within Atu0730 at 729.766 kb on + strand, within Atu0730 at 729.786 kb on + strand, within Atu0730 at 729.823 kb on - strand, within Atu0730 at 729.825 kb on + strand, within Atu0730 at 729.833 kb on - strand, within Atu0730 at 729.846 kb on - strand at 729.877 kb on - strand at 729.914 kb on - strand at 730.045 kb on + strand at 730.058 kb on + strand, within Atu0731 at 730.129 kb on + strand, within Atu0731 at 730.187 kb on + strand, within Atu0731 at 730.213 kb on - strand, within Atu0731 at 730.228 kb on + strand, within Atu0731 at 730.236 kb on - strand, within Atu0731 at 730.262 kb on + strand, within Atu0731 at 730.355 kb on - strand, within Atu0731 at 730.362 kb on + strand, within Atu0731 at 730.370 kb on + strand, within Atu0731 at 730.370 kb on + strand, within Atu0731 at 730.378 kb on - strand, within Atu0731 at 730.412 kb on - strand, within Atu0731 at 730.533 kb on + strand, within Atu0731 at 730.569 kb on - strand, within Atu0731 at 730.673 kb on + strand, within Atu0731 at 730.914 kb on - strand at 730.954 kb on + strand at 730.962 kb on - strand at 730.962 kb on - strand at 730.962 kb on - strand at 731.009 kb on + strand at 731.017 kb on - strand at 731.130 kb on + strand at 731.139 kb on + strand at 731.177 kb on + strand at 731.230 kb on + strand at 731.242 kb on - strand at 731.263 kb on - strand at 731.364 kb on - strand, within Atu0732 at 731.411 kb on - strand, within Atu0732 at 731.414 kb on + strand, within Atu0732 at 731.422 kb on - strand, within Atu0732 at 731.422 kb on - strand, within Atu0732 at 731.459 kb on - strand, within Atu0732 at 731.491 kb on - strand, within Atu0732 at 731.521 kb on - strand, within Atu0732 at 731.557 kb on - strand, within Atu0732 at 731.559 kb on + strand, within Atu0732 at 731.587 kb on - strand, within Atu0732 at 731.639 kb on - strand, within Atu0732 at 731.692 kb on + strand, within Atu0732 at 731.692 kb on + strand, within Atu0732 at 731.692 kb on + strand, within Atu0732 at 731.787 kb on - strand, within Atu0732 at 731.901 kb on - strand, within Atu0732
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_E10 remove 729,023 - Atu0728 0.74 -0.1 729,103 - +1.4 729,202 + -0.0 729,249 + -0.2 729,527 - Atu0730 0.31 +2.1 729,624 - Atu0730 0.49 -0.8 729,766 + Atu0730 0.76 -0.2 729,786 + Atu0730 0.80 -1.1 729,823 - Atu0730 0.87 -0.6 729,825 + Atu0730 0.87 +1.0 729,833 - Atu0730 0.89 +0.2 729,846 - -0.7 729,877 - -1.6 729,914 - +0.2 730,045 + -1.6 730,058 + Atu0731 0.11 +0.0 730,129 + Atu0731 0.18 +1.7 730,187 + Atu0731 0.24 -0.1 730,213 - Atu0731 0.26 -0.8 730,228 + Atu0731 0.28 -0.5 730,236 - Atu0731 0.29 +0.1 730,262 + Atu0731 0.31 -0.3 730,355 - Atu0731 0.41 -0.6 730,362 + Atu0731 0.41 -1.1 730,370 + Atu0731 0.42 -0.3 730,370 + Atu0731 0.42 +1.4 730,378 - Atu0731 0.43 -0.3 730,412 - Atu0731 0.46 -0.4 730,533 + Atu0731 0.58 +1.8 730,569 - Atu0731 0.62 -0.4 730,673 + Atu0731 0.72 -0.3 730,914 - +0.2 730,954 + -2.8 730,962 - +2.3 730,962 - -0.9 730,962 - +0.1 731,009 + -0.6 731,017 - +1.5 731,130 + -0.5 731,139 + +1.2 731,177 + +0.9 731,230 + +1.0 731,242 - -0.7 731,263 - -0.6 731,364 - Atu0732 0.12 +1.0 731,411 - Atu0732 0.14 +0.1 731,414 + Atu0732 0.14 +1.5 731,422 - Atu0732 0.15 +0.4 731,422 - Atu0732 0.15 -0.1 731,459 - Atu0732 0.17 -0.2 731,491 - Atu0732 0.19 -0.9 731,521 - Atu0732 0.20 +0.8 731,557 - Atu0732 0.22 -0.6 731,559 + Atu0732 0.23 +2.1 731,587 - Atu0732 0.24 -0.1 731,639 - Atu0732 0.27 -0.0 731,692 + Atu0732 0.30 +0.5 731,692 + Atu0732 0.30 +2.7 731,692 + Atu0732 0.30 -0.7 731,787 - Atu0732 0.35 +1.0 731,901 - Atu0732 0.42 +0.4
Or see this region's nucleotide sequence