Strain Fitness in Agrobacterium fabrum C58 around Atu0616

Experiment: AgroPhage_E10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0614 and Atu0616 are separated by 317 nucleotidesAtu0616 and Atu0619 are separated by 208 nucleotides Atu0614: Atu0614 - two component sensor kinase, at 602,711 to 606,538 Atu0614 Atu0616: Atu0616 - tRNA-His, at 606,856 to 606,932 Atu0616 Atu0619: Atu0619 - exopolyphosphatase, at 607,141 to 608,841 Atu0619 Position (kb) 606 607Strain fitness (log2 ratio) -2 -1 0 1 2at 606.750 kb on + strandat 607.006 kb on - strandat 607.034 kb on + strandat 607.034 kb on + strandat 607.042 kb on - strandat 607.046 kb on + strandat 607.046 kb on + strandat 607.046 kb on + strandat 607.054 kb on - strandat 607.054 kb on - strandat 607.126 kb on + strandat 607.138 kb on + strandat 607.185 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction AgroPhage_E10
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606,750 + +2.3
607,006 - -0.3
607,034 + -0.2
607,034 + +0.4
607,042 - -0.7
607,046 + -0.5
607,046 + -0.5
607,046 + +1.0
607,054 - -2.7
607,054 - +2.6
607,126 + -1.5
607,138 + +1.0
607,185 + +1.3

Or see this region's nucleotide sequence