Experiment: AgroPhage_E10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0215 and Atu0216 are separated by 63 nucleotides Atu0216 and Atu0217 are separated by 9 nucleotides
Atu0215: Atu0215 - hypothetical protein, at 220,014 to 220,838
Atu0215
Atu0216: Atu0216 - components of type IV pilus, at 220,902 to 221,888
Atu0216
Atu0217: Atu0217 - components of type IV pilus, at 221,898 to 222,902
Atu0217
Position (kb) 220
221
222 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 219.914 kb on + strand at 219.974 kb on - strand at 220.058 kb on - strand at 220.063 kb on + strand at 220.208 kb on - strand, within Atu0215 at 220.226 kb on + strand, within Atu0215 at 220.233 kb on + strand, within Atu0215 at 220.451 kb on + strand, within Atu0215 at 220.459 kb on - strand, within Atu0215 at 220.483 kb on + strand, within Atu0215 at 220.483 kb on + strand, within Atu0215 at 220.492 kb on + strand, within Atu0215 at 220.567 kb on - strand, within Atu0215 at 220.574 kb on + strand, within Atu0215 at 220.574 kb on + strand, within Atu0215 at 220.574 kb on + strand, within Atu0215 at 220.576 kb on + strand, within Atu0215 at 220.576 kb on + strand, within Atu0215 at 220.582 kb on - strand, within Atu0215 at 220.605 kb on + strand, within Atu0215 at 220.605 kb on + strand, within Atu0215 at 220.630 kb on + strand, within Atu0215 at 220.684 kb on + strand, within Atu0215 at 220.694 kb on - strand, within Atu0215 at 220.694 kb on - strand, within Atu0215 at 220.759 kb on - strand at 220.785 kb on + strand at 220.787 kb on + strand at 220.816 kb on - strand at 220.834 kb on + strand at 220.834 kb on + strand at 220.908 kb on - strand at 220.908 kb on - strand at 221.059 kb on + strand, within Atu0216 at 221.059 kb on + strand, within Atu0216 at 221.086 kb on + strand, within Atu0216 at 221.101 kb on + strand, within Atu0216 at 221.125 kb on - strand, within Atu0216 at 221.181 kb on + strand, within Atu0216 at 221.310 kb on - strand, within Atu0216 at 221.312 kb on + strand, within Atu0216 at 221.318 kb on + strand, within Atu0216 at 221.335 kb on - strand, within Atu0216 at 221.788 kb on + strand, within Atu0216 at 221.826 kb on + strand at 221.999 kb on + strand, within Atu0217 at 222.054 kb on - strand, within Atu0217 at 222.108 kb on - strand, within Atu0217 at 222.115 kb on - strand, within Atu0217 at 222.149 kb on + strand, within Atu0217 at 222.149 kb on + strand, within Atu0217 at 222.245 kb on - strand, within Atu0217 at 222.360 kb on + strand, within Atu0217 at 222.398 kb on + strand, within Atu0217 at 222.474 kb on - strand, within Atu0217 at 222.485 kb on - strand, within Atu0217 at 222.496 kb on + strand, within Atu0217 at 222.504 kb on - strand, within Atu0217 at 222.524 kb on + strand, within Atu0217 at 222.532 kb on - strand, within Atu0217 at 222.545 kb on + strand, within Atu0217 at 222.595 kb on + strand, within Atu0217 at 222.703 kb on + strand, within Atu0217 at 222.745 kb on + strand, within Atu0217 at 222.745 kb on + strand, within Atu0217 at 222.784 kb on + strand, within Atu0217 at 222.846 kb on - strand at 222.853 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_E10 remove 219,914 + -1.5 219,974 - -0.3 220,058 - +0.4 220,063 + -0.4 220,208 - Atu0215 0.24 +1.8 220,226 + Atu0215 0.26 +0.2 220,233 + Atu0215 0.27 -0.2 220,451 + Atu0215 0.53 +1.2 220,459 - Atu0215 0.54 +1.0 220,483 + Atu0215 0.57 -0.5 220,483 + Atu0215 0.57 -0.6 220,492 + Atu0215 0.58 -0.8 220,567 - Atu0215 0.67 -0.4 220,574 + Atu0215 0.68 -1.5 220,574 + Atu0215 0.68 -0.2 220,574 + Atu0215 0.68 +0.2 220,576 + Atu0215 0.68 +0.8 220,576 + Atu0215 0.68 +1.7 220,582 - Atu0215 0.69 +0.0 220,605 + Atu0215 0.72 +0.1 220,605 + Atu0215 0.72 -1.8 220,630 + Atu0215 0.75 -0.1 220,684 + Atu0215 0.81 -0.4 220,694 - Atu0215 0.82 -0.1 220,694 - Atu0215 0.82 +0.2 220,759 - -0.5 220,785 + +1.3 220,787 + +1.0 220,816 - -2.0 220,834 + -1.9 220,834 + -0.2 220,908 - -0.2 220,908 - -0.2 221,059 + Atu0216 0.16 +0.9 221,059 + Atu0216 0.16 +0.5 221,086 + Atu0216 0.19 -0.8 221,101 + Atu0216 0.20 -1.7 221,125 - Atu0216 0.23 -0.3 221,181 + Atu0216 0.28 -1.0 221,310 - Atu0216 0.41 -0.1 221,312 + Atu0216 0.42 -2.8 221,318 + Atu0216 0.42 +0.2 221,335 - Atu0216 0.44 +1.7 221,788 + Atu0216 0.90 +0.2 221,826 + -1.4 221,999 + Atu0217 0.10 -1.4 222,054 - Atu0217 0.16 -1.7 222,108 - Atu0217 0.21 -1.0 222,115 - Atu0217 0.22 -2.0 222,149 + Atu0217 0.25 +1.0 222,149 + Atu0217 0.25 -0.7 222,245 - Atu0217 0.35 -0.6 222,360 + Atu0217 0.46 -2.3 222,398 + Atu0217 0.50 -0.3 222,474 - Atu0217 0.57 -0.4 222,485 - Atu0217 0.58 +2.2 222,496 + Atu0217 0.60 -0.0 222,504 - Atu0217 0.60 -1.0 222,524 + Atu0217 0.62 -0.1 222,532 - Atu0217 0.63 +1.3 222,545 + Atu0217 0.64 -0.3 222,595 + Atu0217 0.69 -0.7 222,703 + Atu0217 0.80 +0.4 222,745 + Atu0217 0.84 +0.1 222,745 + Atu0217 0.84 -0.8 222,784 + Atu0217 0.88 -1.4 222,846 - +3.1 222,853 + +0.4
Or see this region's nucleotide sequence