Experiment: AgroPhage_E04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu4465 and Atu4466 are separated by 197 nucleotides Atu4466 and Atu4467 are separated by 55 nucleotides Atu4467 and Atu4468 are separated by 206 nucleotides
Atu4465: Atu4465 - transcriptional regulator, at 1,607,759 to 1,608,526
Atu4465
Atu4466: Atu4466 - oxidoreductase, at 1,608,724 to 1,609,455
Atu4466
Atu4467: Atu4467 - hypothetical protein, at 1,609,511 to 1,609,684
Atu4467
Atu4468: Atu4468 - iron transport ABC transporter permease, at 1,609,891 to 1,610,745
Atu4468
Position (kb)
1608
1609
1610 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1607.831 kb on + strand at 1607.844 kb on + strand, within Atu4465 at 1607.929 kb on + strand, within Atu4465 at 1608.116 kb on - strand, within Atu4465 at 1608.140 kb on + strand, within Atu4465 at 1608.212 kb on + strand, within Atu4465 at 1608.242 kb on + strand, within Atu4465 at 1608.260 kb on + strand, within Atu4465 at 1608.356 kb on - strand, within Atu4465 at 1608.371 kb on + strand, within Atu4465 at 1608.438 kb on - strand, within Atu4465 at 1608.452 kb on + strand at 1608.460 kb on - strand at 1608.470 kb on + strand at 1608.532 kb on - strand at 1608.584 kb on + strand at 1608.591 kb on + strand at 1608.591 kb on + strand at 1608.599 kb on - strand at 1608.741 kb on - strand at 1608.949 kb on + strand, within Atu4466 at 1608.957 kb on - strand, within Atu4466 at 1608.959 kb on - strand, within Atu4466 at 1609.086 kb on + strand, within Atu4466 at 1609.128 kb on + strand, within Atu4466 at 1609.238 kb on - strand, within Atu4466 at 1609.349 kb on + strand, within Atu4466 at 1609.383 kb on - strand at 1609.790 kb on + strand at 1609.965 kb on - strand at 1610.201 kb on + strand, within Atu4468 at 1610.201 kb on + strand, within Atu4468 at 1610.242 kb on - strand, within Atu4468 at 1610.264 kb on + strand, within Atu4468 at 1610.322 kb on - strand, within Atu4468 at 1610.335 kb on + strand, within Atu4468 at 1610.373 kb on - strand, within Atu4468 at 1610.378 kb on - strand, within Atu4468 at 1610.400 kb on + strand, within Atu4468 at 1610.423 kb on + strand, within Atu4468
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_E04 remove 1,607,831 + -0.6 1,607,844 + Atu4465 0.11 -1.3 1,607,929 + Atu4465 0.22 -0.7 1,608,116 - Atu4465 0.46 -0.6 1,608,140 + Atu4465 0.50 -2.3 1,608,212 + Atu4465 0.59 -0.2 1,608,242 + Atu4465 0.63 -0.5 1,608,260 + Atu4465 0.65 -1.4 1,608,356 - Atu4465 0.78 +0.3 1,608,371 + Atu4465 0.80 -0.1 1,608,438 - Atu4465 0.88 -1.2 1,608,452 + +0.0 1,608,460 - +0.7 1,608,470 + -2.9 1,608,532 - +0.3 1,608,584 + -2.1 1,608,591 + -1.9 1,608,591 + -0.2 1,608,599 - -1.4 1,608,741 - +0.6 1,608,949 + Atu4466 0.31 +2.0 1,608,957 - Atu4466 0.32 -1.7 1,608,959 - Atu4466 0.32 -0.7 1,609,086 + Atu4466 0.49 -0.4 1,609,128 + Atu4466 0.55 +0.9 1,609,238 - Atu4466 0.70 -0.5 1,609,349 + Atu4466 0.85 -0.0 1,609,383 - -3.2 1,609,790 + +0.4 1,609,965 - -0.6 1,610,201 + Atu4468 0.36 -0.2 1,610,201 + Atu4468 0.36 +1.0 1,610,242 - Atu4468 0.41 +1.0 1,610,264 + Atu4468 0.44 +1.8 1,610,322 - Atu4468 0.50 -1.6 1,610,335 + Atu4468 0.52 -0.5 1,610,373 - Atu4468 0.56 +0.1 1,610,378 - Atu4468 0.57 +1.6 1,610,400 + Atu4468 0.60 -0.9 1,610,423 + Atu4468 0.62 -0.8
Or see this region's nucleotide sequence