Experiment: AgroPhage_E04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3560 and Atu3561 are separated by 375 nucleotides Atu3561 and Atu3562 overlap by 25 nucleotides Atu3562 and Atu3563 are separated by 54 nucleotides Atu3563 and Atu3564 are separated by 271 nucleotides
Atu3560: Atu3560 - glycosyltransferase, at 613,852 to 615,000
Atu3560
Atu3561: Atu3561 - hypothetical protein, at 615,376 to 615,840
Atu3561
Atu3562: Atu3562 - hypothetical protein, at 615,816 to 616,241
Atu3562
Atu3563: Atu3563 - transcription elongation factor regulatory protein, at 616,296 to 616,778
Atu3563
Atu3564: Atu3564 - endo-1,3-1,4-beta-glycanase, at 617,050 to 618,447
Atu3564
Position (kb) 615
616
617 Strain fitness (log2 ratio) -2
-1
0
1
2 at 614.924 kb on + strand at 614.924 kb on + strand at 614.932 kb on - strand at 615.041 kb on + strand at 615.059 kb on - strand at 615.076 kb on - strand at 615.319 kb on + strand at 615.327 kb on - strand at 615.339 kb on - strand at 615.396 kb on + strand at 615.419 kb on + strand at 615.427 kb on - strand, within Atu3561 at 615.504 kb on - strand, within Atu3561 at 615.600 kb on - strand, within Atu3561 at 615.677 kb on + strand, within Atu3561 at 615.756 kb on + strand, within Atu3561 at 615.889 kb on + strand, within Atu3562 at 616.159 kb on - strand, within Atu3562 at 616.159 kb on - strand, within Atu3562 at 616.260 kb on - strand at 616.267 kb on - strand at 616.387 kb on + strand, within Atu3563 at 616.387 kb on + strand, within Atu3563 at 616.424 kb on - strand, within Atu3563 at 616.424 kb on - strand, within Atu3563 at 616.425 kb on - strand, within Atu3563 at 616.527 kb on - strand, within Atu3563 at 616.527 kb on - strand, within Atu3563 at 616.542 kb on - strand, within Atu3563 at 616.542 kb on - strand, within Atu3563 at 616.615 kb on + strand, within Atu3563 at 616.736 kb on - strand at 616.758 kb on - strand at 616.769 kb on - strand at 616.787 kb on + strand at 616.850 kb on + strand at 616.850 kb on + strand at 616.948 kb on + strand at 617.004 kb on + strand at 617.012 kb on - strand at 617.079 kb on + strand at 617.086 kb on + strand at 617.086 kb on + strand at 617.094 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_E04 remove 614,924 + -0.4 614,924 + +0.2 614,932 - +1.5 615,041 + -0.4 615,059 - -0.4 615,076 - +0.5 615,319 + +0.7 615,327 - -0.9 615,339 - +1.1 615,396 + -0.7 615,419 + -2.1 615,427 - Atu3561 0.11 -0.5 615,504 - Atu3561 0.28 -1.2 615,600 - Atu3561 0.48 -0.5 615,677 + Atu3561 0.65 +1.1 615,756 + Atu3561 0.82 +0.4 615,889 + Atu3562 0.17 +0.0 616,159 - Atu3562 0.81 -1.0 616,159 - Atu3562 0.81 -1.6 616,260 - +0.1 616,267 - +1.1 616,387 + Atu3563 0.19 +1.1 616,387 + Atu3563 0.19 -0.1 616,424 - Atu3563 0.27 +0.2 616,424 - Atu3563 0.27 -1.3 616,425 - Atu3563 0.27 -0.0 616,527 - Atu3563 0.48 -0.0 616,527 - Atu3563 0.48 -0.2 616,542 - Atu3563 0.51 -0.5 616,542 - Atu3563 0.51 +0.1 616,615 + Atu3563 0.66 +1.5 616,736 - +0.0 616,758 - -0.6 616,769 - +1.0 616,787 + -2.0 616,850 + -0.4 616,850 + +1.0 616,948 + -1.0 617,004 + -1.0 617,012 - -0.7 617,079 + +0.6 617,086 + -1.3 617,086 + -0.9 617,094 - +2.1
Or see this region's nucleotide sequence