Experiment: AgroPhage_E04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3518 and Atu3519 are separated by 92 nucleotides Atu3519 and Atu3520 are separated by 242 nucleotides
Atu3518: Atu3518 - bifunctional ornithine acetyltransferase/N-acetylglutamate synthase, at 564,814 to 566,055
Atu3518
Atu3519: Atu3519 - peptidyl-prolyl cis-trans isomerase, at 566,148 to 567,014
Atu3519
Atu3520: Atu3520 - preprotein translocase subunit SecA, at 567,257 to 569,965
Atu3520
Position (kb) 566
567
568 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 565.224 kb on + strand, within Atu3518 at 565.267 kb on + strand, within Atu3518 at 565.297 kb on - strand, within Atu3518 at 565.392 kb on - strand, within Atu3518 at 565.403 kb on - strand, within Atu3518 at 565.473 kb on - strand, within Atu3518 at 565.555 kb on + strand, within Atu3518 at 565.633 kb on - strand, within Atu3518 at 565.769 kb on + strand, within Atu3518 at 565.769 kb on + strand, within Atu3518 at 565.777 kb on - strand, within Atu3518 at 565.777 kb on - strand, within Atu3518 at 565.794 kb on - strand, within Atu3518 at 565.816 kb on - strand, within Atu3518 at 565.838 kb on - strand, within Atu3518 at 565.919 kb on + strand, within Atu3518 at 565.944 kb on - strand at 565.986 kb on + strand at 566.086 kb on + strand at 566.237 kb on - strand, within Atu3519 at 566.247 kb on - strand, within Atu3519 at 566.247 kb on - strand, within Atu3519 at 566.294 kb on - strand, within Atu3519 at 566.365 kb on - strand, within Atu3519 at 566.394 kb on - strand, within Atu3519 at 566.412 kb on + strand, within Atu3519 at 566.471 kb on - strand, within Atu3519 at 566.471 kb on - strand, within Atu3519 at 566.567 kb on + strand, within Atu3519 at 566.619 kb on - strand, within Atu3519 at 566.654 kb on - strand, within Atu3519 at 566.654 kb on - strand, within Atu3519 at 566.698 kb on + strand, within Atu3519 at 566.811 kb on + strand, within Atu3519 at 566.811 kb on + strand, within Atu3519 at 566.811 kb on + strand, within Atu3519 at 566.819 kb on - strand, within Atu3519 at 566.819 kb on - strand, within Atu3519 at 566.824 kb on + strand, within Atu3519 at 566.866 kb on + strand, within Atu3519 at 566.957 kb on + strand at 567.013 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_E04 remove 565,224 + Atu3518 0.33 -1.9 565,267 + Atu3518 0.36 -0.4 565,297 - Atu3518 0.39 -0.4 565,392 - Atu3518 0.47 +0.2 565,403 - Atu3518 0.47 -0.8 565,473 - Atu3518 0.53 -1.3 565,555 + Atu3518 0.60 -0.1 565,633 - Atu3518 0.66 -1.9 565,769 + Atu3518 0.77 -0.6 565,769 + Atu3518 0.77 -0.3 565,777 - Atu3518 0.78 -1.7 565,777 - Atu3518 0.78 -0.3 565,794 - Atu3518 0.79 -0.7 565,816 - Atu3518 0.81 -1.2 565,838 - Atu3518 0.82 -1.9 565,919 + Atu3518 0.89 +0.6 565,944 - +0.1 565,986 + +1.8 566,086 + -3.5 566,237 - Atu3519 0.10 +4.0 566,247 - Atu3519 0.11 -1.0 566,247 - Atu3519 0.11 +1.9 566,294 - Atu3519 0.17 +1.3 566,365 - Atu3519 0.25 +2.4 566,394 - Atu3519 0.28 +0.7 566,412 + Atu3519 0.30 +2.2 566,471 - Atu3519 0.37 -2.1 566,471 - Atu3519 0.37 +0.3 566,567 + Atu3519 0.48 +0.8 566,619 - Atu3519 0.54 -1.8 566,654 - Atu3519 0.58 +1.5 566,654 - Atu3519 0.58 +2.9 566,698 + Atu3519 0.63 +0.6 566,811 + Atu3519 0.76 +3.3 566,811 + Atu3519 0.76 -0.2 566,811 + Atu3519 0.76 +1.2 566,819 - Atu3519 0.77 -2.9 566,819 - Atu3519 0.77 -2.0 566,824 + Atu3519 0.78 -1.2 566,866 + Atu3519 0.83 -1.0 566,957 + -0.4 567,013 + +0.8
Or see this region's nucleotide sequence