Experiment: AgroPhage_E04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3453 and Atu3454 are separated by 6 nucleotides Atu3454 and Atu3455 are separated by 81 nucleotides
Atu3453: Atu3453 - isomerase/lactonizing enzyme, at 500,975 to 502,123
Atu3453
Atu3454: Atu3454 - arylesterase, at 502,130 to 502,759
Atu3454
Atu3455: Atu3455 - oligopeptide ABC transporter substrate-binding protein, at 502,841 to 504,439
Atu3455
Position (kb) 502
503 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 501.199 kb on + strand, within Atu3453 at 501.219 kb on + strand, within Atu3453 at 501.233 kb on - strand, within Atu3453 at 501.252 kb on - strand, within Atu3453 at 501.259 kb on + strand, within Atu3453 at 501.289 kb on - strand, within Atu3453 at 501.329 kb on + strand, within Atu3453 at 501.351 kb on - strand, within Atu3453 at 501.373 kb on - strand, within Atu3453 at 501.373 kb on - strand, within Atu3453 at 501.518 kb on + strand, within Atu3453 at 501.532 kb on + strand, within Atu3453 at 501.556 kb on - strand, within Atu3453 at 501.621 kb on + strand, within Atu3453 at 501.764 kb on + strand, within Atu3453 at 501.843 kb on + strand, within Atu3453 at 501.853 kb on + strand, within Atu3453 at 501.858 kb on - strand, within Atu3453 at 501.962 kb on - strand, within Atu3453 at 501.992 kb on + strand, within Atu3453 at 502.016 kb on - strand at 502.078 kb on - strand at 502.119 kb on + strand at 502.146 kb on + strand at 502.156 kb on + strand at 502.187 kb on + strand at 502.195 kb on - strand, within Atu3454 at 502.195 kb on - strand, within Atu3454 at 502.218 kb on - strand, within Atu3454 at 502.233 kb on - strand, within Atu3454 at 502.351 kb on + strand, within Atu3454 at 502.359 kb on - strand, within Atu3454 at 502.450 kb on + strand, within Atu3454 at 502.539 kb on - strand, within Atu3454 at 502.577 kb on + strand, within Atu3454 at 502.583 kb on - strand, within Atu3454 at 502.583 kb on - strand, within Atu3454 at 502.585 kb on + strand, within Atu3454 at 502.738 kb on + strand at 502.738 kb on + strand at 502.860 kb on + strand at 502.875 kb on - strand at 502.988 kb on - strand at 503.006 kb on + strand, within Atu3455 at 503.014 kb on - strand, within Atu3455 at 503.025 kb on - strand, within Atu3455 at 503.025 kb on - strand, within Atu3455 at 503.058 kb on + strand, within Atu3455 at 503.123 kb on - strand, within Atu3455 at 503.251 kb on + strand, within Atu3455 at 503.308 kb on + strand, within Atu3455 at 503.308 kb on + strand, within Atu3455 at 503.316 kb on - strand, within Atu3455 at 503.427 kb on + strand, within Atu3455 at 503.457 kb on + strand, within Atu3455 at 503.457 kb on + strand, within Atu3455 at 503.466 kb on - strand, within Atu3455 at 503.473 kb on + strand, within Atu3455 at 503.490 kb on + strand, within Atu3455 at 503.590 kb on - strand, within Atu3455 at 503.604 kb on + strand, within Atu3455 at 503.639 kb on - strand, within Atu3455
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_E04 remove 501,199 + Atu3453 0.19 +1.0 501,219 + Atu3453 0.21 +2.3 501,233 - Atu3453 0.22 +1.8 501,252 - Atu3453 0.24 +1.0 501,259 + Atu3453 0.25 -0.8 501,289 - Atu3453 0.27 -0.3 501,329 + Atu3453 0.31 +0.3 501,351 - Atu3453 0.33 +0.5 501,373 - Atu3453 0.35 +0.6 501,373 - Atu3453 0.35 +0.2 501,518 + Atu3453 0.47 +1.3 501,532 + Atu3453 0.48 -0.5 501,556 - Atu3453 0.51 +0.8 501,621 + Atu3453 0.56 +0.2 501,764 + Atu3453 0.69 -0.6 501,843 + Atu3453 0.76 +1.0 501,853 + Atu3453 0.76 -0.4 501,858 - Atu3453 0.77 -0.0 501,962 - Atu3453 0.86 -1.1 501,992 + Atu3453 0.89 +0.8 502,016 - -0.1 502,078 - -0.1 502,119 + +0.0 502,146 + -1.6 502,156 + -0.2 502,187 + +0.0 502,195 - Atu3454 0.10 -0.5 502,195 - Atu3454 0.10 +2.2 502,218 - Atu3454 0.14 +0.9 502,233 - Atu3454 0.16 -0.5 502,351 + Atu3454 0.35 +0.6 502,359 - Atu3454 0.36 +0.8 502,450 + Atu3454 0.51 +0.5 502,539 - Atu3454 0.65 +0.2 502,577 + Atu3454 0.71 -0.3 502,583 - Atu3454 0.72 +0.2 502,583 - Atu3454 0.72 +2.0 502,585 + Atu3454 0.72 -1.4 502,738 + +1.3 502,738 + +0.6 502,860 + +0.7 502,875 - -2.9 502,988 - -1.8 503,006 + Atu3455 0.10 -0.7 503,014 - Atu3455 0.11 -0.7 503,025 - Atu3455 0.12 -1.0 503,025 - Atu3455 0.12 -0.8 503,058 + Atu3455 0.14 +1.1 503,123 - Atu3455 0.18 +0.0 503,251 + Atu3455 0.26 -0.2 503,308 + Atu3455 0.29 -2.7 503,308 + Atu3455 0.29 -1.0 503,316 - Atu3455 0.30 +0.0 503,427 + Atu3455 0.37 -1.2 503,457 + Atu3455 0.39 +1.1 503,457 + Atu3455 0.39 -0.7 503,466 - Atu3455 0.39 -0.4 503,473 + Atu3455 0.40 -0.6 503,490 + Atu3455 0.41 +0.3 503,590 - Atu3455 0.47 +0.5 503,604 + Atu3455 0.48 +0.7 503,639 - Atu3455 0.50 +0.5
Or see this region's nucleotide sequence