Strain Fitness in Agrobacterium fabrum C58 around Atu3192

Experiment: AgroPhage_E04

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3191 and Atu3192 are separated by 273 nucleotidesAtu3192 and Atu3193 are separated by 69 nucleotidesAtu3193 and Atu3194 are separated by 146 nucleotides Atu3191: Atu3191 - outer membrane protein, at 200,556 to 201,242 Atu3191 Atu3192: Atu3192 - MFS permease, at 201,516 to 202,811 Atu3192 Atu3193: Atu3193 - MarR family transcriptional regulator, at 202,881 to 203,282 Atu3193 Atu3194: Atu3194 - acetyltransferase, at 203,429 to 203,998 Atu3194 Position (kb) 201 202 203Strain fitness (log2 ratio) -2 -1 0 1 2at 200.536 kb on + strandat 200.537 kb on + strandat 200.545 kb on - strandat 200.802 kb on + strand, within Atu3191at 200.815 kb on + strand, within Atu3191at 200.821 kb on - strand, within Atu3191at 200.825 kb on - strand, within Atu3191at 200.882 kb on + strand, within Atu3191at 200.900 kb on - strand, within Atu3191at 200.952 kb on + strand, within Atu3191at 201.014 kb on + strand, within Atu3191at 201.027 kb on - strand, within Atu3191at 201.027 kb on - strand, within Atu3191at 201.029 kb on + strand, within Atu3191at 201.032 kb on - strand, within Atu3191at 201.037 kb on - strand, within Atu3191at 201.077 kb on + strand, within Atu3191at 201.215 kb on - strandat 201.346 kb on - strandat 201.403 kb on + strandat 201.411 kb on - strandat 201.443 kb on + strandat 201.507 kb on + strandat 201.591 kb on + strandat 201.599 kb on - strandat 201.780 kb on + strand, within Atu3192at 201.876 kb on - strand, within Atu3192at 201.882 kb on - strand, within Atu3192at 201.993 kb on + strand, within Atu3192at 202.024 kb on + strand, within Atu3192at 202.024 kb on + strand, within Atu3192at 202.047 kb on - strand, within Atu3192at 202.049 kb on - strand, within Atu3192at 202.116 kb on + strand, within Atu3192at 202.275 kb on + strand, within Atu3192at 202.302 kb on - strand, within Atu3192at 202.365 kb on - strand, within Atu3192at 202.412 kb on + strand, within Atu3192at 202.533 kb on + strand, within Atu3192at 202.533 kb on + strand, within Atu3192at 202.594 kb on + strand, within Atu3192at 202.694 kb on + strandat 202.944 kb on - strand, within Atu3193at 203.023 kb on - strand, within Atu3193at 203.033 kb on - strand, within Atu3193at 203.096 kb on - strand, within Atu3193at 203.178 kb on - strand, within Atu3193at 203.231 kb on - strand, within Atu3193at 203.250 kb on - strandat 203.322 kb on - strandat 203.343 kb on + strandat 203.343 kb on + strandat 203.398 kb on - strandat 203.466 kb on - strandat 203.616 kb on - strand, within Atu3194at 203.654 kb on + strand, within Atu3194at 203.659 kb on + strand, within Atu3194at 203.662 kb on - strand, within Atu3194at 203.662 kb on - strand, within Atu3194at 203.662 kb on - strand, within Atu3194at 203.681 kb on - strand, within Atu3194at 203.681 kb on - strand, within Atu3194at 203.681 kb on - strand, within Atu3194at 203.681 kb on - strand, within Atu3194

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Per-strain Table

Position Strand Gene LocusTag Fraction AgroPhage_E04
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200,536 + -1.6
200,537 + +2.1
200,545 - -1.0
200,802 + Atu3191 0.36 +1.1
200,815 + Atu3191 0.38 -0.2
200,821 - Atu3191 0.39 -0.5
200,825 - Atu3191 0.39 -2.2
200,882 + Atu3191 0.47 -1.3
200,900 - Atu3191 0.50 +2.0
200,952 + Atu3191 0.58 -0.9
201,014 + Atu3191 0.67 -0.1
201,027 - Atu3191 0.69 +1.0
201,027 - Atu3191 0.69 +0.1
201,029 + Atu3191 0.69 -1.0
201,032 - Atu3191 0.69 -2.0
201,037 - Atu3191 0.70 -0.9
201,077 + Atu3191 0.76 -2.6
201,215 - -0.2
201,346 - -1.4
201,403 + +0.3
201,411 - -0.1
201,443 + -0.1
201,507 + -1.1
201,591 + +0.6
201,599 - +1.1
201,780 + Atu3192 0.20 -0.2
201,876 - Atu3192 0.28 +1.1
201,882 - Atu3192 0.28 -1.7
201,993 + Atu3192 0.37 +1.1
202,024 + Atu3192 0.39 -0.4
202,024 + Atu3192 0.39 -0.4
202,047 - Atu3192 0.41 -1.8
202,049 - Atu3192 0.41 +0.2
202,116 + Atu3192 0.46 -1.8
202,275 + Atu3192 0.59 +0.1
202,302 - Atu3192 0.61 -1.5
202,365 - Atu3192 0.66 -0.8
202,412 + Atu3192 0.69 +0.6
202,533 + Atu3192 0.78 +0.5
202,533 + Atu3192 0.78 -0.3
202,594 + Atu3192 0.83 -0.3
202,694 + -0.1
202,944 - Atu3193 0.16 +0.2
203,023 - Atu3193 0.35 +0.1
203,033 - Atu3193 0.38 +0.4
203,096 - Atu3193 0.53 -0.4
203,178 - Atu3193 0.74 -0.5
203,231 - Atu3193 0.87 -0.2
203,250 - -0.0
203,322 - +0.6
203,343 + -0.7
203,343 + +0.0
203,398 - -0.9
203,466 - -1.0
203,616 - Atu3194 0.33 +1.3
203,654 + Atu3194 0.39 +0.5
203,659 + Atu3194 0.40 -0.2
203,662 - Atu3194 0.41 -0.4
203,662 - Atu3194 0.41 +0.6
203,662 - Atu3194 0.41 -0.5
203,681 - Atu3194 0.44 -1.6
203,681 - Atu3194 0.44 -1.2
203,681 - Atu3194 0.44 +0.7
203,681 - Atu3194 0.44 -0.3

Or see this region's nucleotide sequence