Experiment: AgroPhage_E04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3174 and Atu3175 are separated by 38 nucleotides Atu3175 and Atu3176 overlap by 4 nucleotides Atu3176 and Atu3177 are separated by 216 nucleotides
Atu3174: Atu3174 - sugar ABC transporter substrate-binding protein, at 183,965 to 185,224
Atu3174
Atu3175: Atu3175 - hypothetical protein, at 185,263 to 186,435
Atu3175
Atu3176: Atu3176 - GntR family transcriptional regulator, at 186,432 to 187,148
Atu3176
Atu3177: Atu3177 - ribonuclease H, at 187,365 to 187,838
Atu3177
Position (kb) 185
186
187 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 184.275 kb on - strand, within Atu3174 at 184.293 kb on - strand, within Atu3174 at 184.556 kb on + strand, within Atu3174 at 184.564 kb on - strand, within Atu3174 at 184.604 kb on - strand, within Atu3174 at 184.618 kb on + strand, within Atu3174 at 184.626 kb on - strand, within Atu3174 at 184.648 kb on + strand, within Atu3174 at 184.658 kb on + strand, within Atu3174 at 184.692 kb on - strand, within Atu3174 at 184.718 kb on - strand, within Atu3174 at 184.813 kb on + strand, within Atu3174 at 184.821 kb on - strand, within Atu3174 at 184.926 kb on - strand, within Atu3174 at 184.926 kb on - strand, within Atu3174 at 185.005 kb on + strand, within Atu3174 at 185.045 kb on - strand, within Atu3174 at 185.132 kb on + strand at 185.140 kb on - strand at 185.787 kb on + strand, within Atu3175 at 185.881 kb on + strand, within Atu3175 at 185.948 kb on - strand, within Atu3175 at 185.996 kb on - strand, within Atu3175 at 186.082 kb on - strand, within Atu3175 at 186.135 kb on - strand, within Atu3175 at 186.163 kb on - strand, within Atu3175 at 186.163 kb on - strand, within Atu3175 at 186.238 kb on + strand, within Atu3175 at 186.249 kb on + strand, within Atu3175 at 186.394 kb on + strand at 186.407 kb on + strand at 186.523 kb on + strand, within Atu3176 at 186.523 kb on + strand, within Atu3176 at 186.525 kb on - strand, within Atu3176 at 186.531 kb on - strand, within Atu3176 at 186.584 kb on + strand, within Atu3176 at 186.584 kb on - strand, within Atu3176 at 186.592 kb on - strand, within Atu3176 at 186.623 kb on - strand, within Atu3176 at 186.700 kb on - strand, within Atu3176 at 186.700 kb on - strand, within Atu3176 at 186.761 kb on + strand, within Atu3176 at 186.769 kb on + strand, within Atu3176 at 186.803 kb on + strand, within Atu3176 at 186.831 kb on + strand, within Atu3176 at 186.837 kb on - strand, within Atu3176 at 186.994 kb on + strand, within Atu3176 at 187.052 kb on - strand, within Atu3176 at 187.058 kb on + strand, within Atu3176 at 187.089 kb on - strand at 187.143 kb on + strand at 187.151 kb on - strand at 187.151 kb on - strand at 187.151 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_E04 remove 184,275 - Atu3174 0.25 +0.5 184,293 - Atu3174 0.26 +0.2 184,556 + Atu3174 0.47 -0.3 184,564 - Atu3174 0.48 +0.4 184,604 - Atu3174 0.51 -0.4 184,618 + Atu3174 0.52 -0.2 184,626 - Atu3174 0.52 -0.0 184,648 + Atu3174 0.54 +0.1 184,658 + Atu3174 0.55 +0.8 184,692 - Atu3174 0.58 +0.2 184,718 - Atu3174 0.60 -0.1 184,813 + Atu3174 0.67 -0.0 184,821 - Atu3174 0.68 +0.6 184,926 - Atu3174 0.76 -1.2 184,926 - Atu3174 0.76 +0.7 185,005 + Atu3174 0.83 -1.5 185,045 - Atu3174 0.86 -0.5 185,132 + +1.8 185,140 - -0.3 185,787 + Atu3175 0.45 -2.1 185,881 + Atu3175 0.53 -1.2 185,948 - Atu3175 0.58 -2.0 185,996 - Atu3175 0.62 +0.1 186,082 - Atu3175 0.70 -0.9 186,135 - Atu3175 0.74 -0.1 186,163 - Atu3175 0.77 -2.1 186,163 - Atu3175 0.77 +0.1 186,238 + Atu3175 0.83 +1.5 186,249 + Atu3175 0.84 -1.3 186,394 + -0.6 186,407 + +0.4 186,523 + Atu3176 0.13 +0.6 186,523 + Atu3176 0.13 -0.1 186,525 - Atu3176 0.13 -0.4 186,531 - Atu3176 0.14 +0.8 186,584 + Atu3176 0.21 +0.2 186,584 - Atu3176 0.21 +3.4 186,592 - Atu3176 0.22 +0.5 186,623 - Atu3176 0.27 -0.1 186,700 - Atu3176 0.37 +0.6 186,700 - Atu3176 0.37 +0.5 186,761 + Atu3176 0.46 +0.4 186,769 + Atu3176 0.47 -1.4 186,803 + Atu3176 0.52 +0.5 186,831 + Atu3176 0.56 +0.3 186,837 - Atu3176 0.56 +1.7 186,994 + Atu3176 0.78 +0.6 187,052 - Atu3176 0.86 +1.0 187,058 + Atu3176 0.87 -0.3 187,089 - -1.5 187,143 + -0.4 187,151 - -0.7 187,151 - -0.0 187,151 - +1.2
Or see this region's nucleotide sequence