Experiment: AgroPhage_E04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu1384 and Atu1385 are separated by 81 nucleotides Atu1385 and Atu1386 overlap by 4 nucleotides Atu1386 and Atu1387 are separated by 192 nucleotides Atu1387 and Atu1388 are separated by 6 nucleotides
Atu1384: Atu1384 - acyl-(acyl carrier protein)--UDP-N-acetylglucosamine O-acyltransferase, at 1,378,412 to 1,379,227
Atu1384
Atu1385: Atu1385 - hypothetical protein, at 1,379,309 to 1,380,112
Atu1385
Atu1386: Atu1386 - lipid A-disaccharide synthase, at 1,380,109 to 1,381,293
Atu1386
Atu1387: Atu1387 - transcriptional regulator, GntR family, at 1,381,486 to 1,382,196
Atu1387
Atu1388: Atu1388 - ABC transporter, substrate binding protein (amino acid), at 1,382,203 to 1,382,988
Atu1388
Position (kb) 1380
1381
1382 Strain fitness (log2 ratio) -1
0
1
2 at 1380.070 kb on + strand at 1380.108 kb on + strand at 1381.300 kb on - strand at 1381.357 kb on - strand at 1381.372 kb on - strand at 1381.372 kb on - strand at 1381.431 kb on - strand at 1381.739 kb on - strand, within Atu1387 at 1381.861 kb on - strand, within Atu1387 at 1382.038 kb on - strand, within Atu1387 at 1382.257 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_E04 remove 1,380,070 + +0.5 1,380,108 + -0.2 1,381,300 - +0.6 1,381,357 - +0.1 1,381,372 - -0.4 1,381,372 - -0.5 1,381,431 - -0.5 1,381,739 - Atu1387 0.36 +0.7 1,381,861 - Atu1387 0.53 +0.5 1,382,038 - Atu1387 0.78 -1.0 1,382,257 - +1.8
Or see this region's nucleotide sequence