Experiment: AgroPhage_E04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0672 and Atu0673 are separated by 25 nucleotides Atu0673 and Atu0674 are separated by 6 nucleotides Atu0674 and Atu0675 overlap by 17 nucleotides Atu0675 and Atu0676 are separated by 156 nucleotides
Atu0672: Atu0672 - transcriptional regulator, LysR family, at 668,543 to 669,460
Atu0672
Atu0673: Atu0673 - hypothetical protein, at 669,486 to 670,250
Atu0673
Atu0674: Atu0674 - hypothetical protein, at 670,257 to 670,526
Atu0674
Atu0675: Atu0675 - hypothetical protein, at 670,510 to 670,737
Atu0675
Atu0676: Atu0676 - histidyl-tRNA synthetase, at 670,894 to 672,417
Atu0676
Position (kb) 669
670
671 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 668.494 kb on - strand at 668.547 kb on + strand at 668.599 kb on - strand at 668.599 kb on - strand at 668.834 kb on + strand, within Atu0672 at 668.834 kb on + strand, within Atu0672 at 668.842 kb on - strand, within Atu0672 at 668.868 kb on + strand, within Atu0672 at 668.948 kb on + strand, within Atu0672 at 668.948 kb on + strand, within Atu0672 at 668.953 kb on + strand, within Atu0672 at 668.956 kb on - strand, within Atu0672 at 668.975 kb on - strand, within Atu0672 at 669.002 kb on + strand, within Atu0672 at 669.011 kb on + strand, within Atu0672 at 669.033 kb on + strand, within Atu0672 at 669.059 kb on - strand, within Atu0672 at 669.083 kb on - strand, within Atu0672 at 669.112 kb on + strand, within Atu0672 at 669.119 kb on - strand, within Atu0672 at 669.122 kb on - strand, within Atu0672 at 669.133 kb on + strand, within Atu0672 at 669.133 kb on + strand, within Atu0672 at 669.382 kb on - strand at 669.475 kb on - strand at 669.628 kb on + strand, within Atu0673 at 669.628 kb on + strand, within Atu0673 at 669.655 kb on - strand, within Atu0673 at 669.693 kb on + strand, within Atu0673 at 669.762 kb on - strand, within Atu0673 at 669.784 kb on - strand, within Atu0673 at 670.003 kb on + strand, within Atu0673 at 670.038 kb on - strand, within Atu0673 at 670.038 kb on - strand, within Atu0673 at 670.058 kb on - strand, within Atu0673 at 670.134 kb on + strand, within Atu0673 at 670.159 kb on + strand, within Atu0673 at 670.245 kb on - strand at 670.245 kb on - strand at 670.245 kb on - strand at 670.285 kb on + strand, within Atu0674 at 670.285 kb on + strand, within Atu0674 at 670.319 kb on + strand, within Atu0674 at 670.383 kb on + strand, within Atu0674 at 670.498 kb on + strand, within Atu0674 at 670.516 kb on + strand at 670.524 kb on - strand at 670.529 kb on - strand at 670.534 kb on - strand, within Atu0675 at 670.841 kb on + strand at 670.849 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_E04 remove 668,494 - -0.6 668,547 + -0.9 668,599 - -1.3 668,599 - +1.4 668,834 + Atu0672 0.32 +0.6 668,834 + Atu0672 0.32 -1.7 668,842 - Atu0672 0.33 +0.8 668,868 + Atu0672 0.35 +0.1 668,948 + Atu0672 0.44 +0.0 668,948 + Atu0672 0.44 +1.0 668,953 + Atu0672 0.45 -0.1 668,956 - Atu0672 0.45 +0.4 668,975 - Atu0672 0.47 -1.4 669,002 + Atu0672 0.50 +0.7 669,011 + Atu0672 0.51 -0.4 669,033 + Atu0672 0.53 +0.9 669,059 - Atu0672 0.56 +0.0 669,083 - Atu0672 0.59 -0.5 669,112 + Atu0672 0.62 +0.0 669,119 - Atu0672 0.63 +0.6 669,122 - Atu0672 0.63 +2.6 669,133 + Atu0672 0.64 -0.4 669,133 + Atu0672 0.64 -0.6 669,382 - +0.7 669,475 - +1.8 669,628 + Atu0673 0.19 -0.4 669,628 + Atu0673 0.19 -1.9 669,655 - Atu0673 0.22 -0.1 669,693 + Atu0673 0.27 +0.9 669,762 - Atu0673 0.36 -0.4 669,784 - Atu0673 0.39 -0.2 670,003 + Atu0673 0.68 -0.6 670,038 - Atu0673 0.72 +1.8 670,038 - Atu0673 0.72 -0.3 670,058 - Atu0673 0.75 -1.8 670,134 + Atu0673 0.85 +2.0 670,159 + Atu0673 0.88 -0.1 670,245 - +0.3 670,245 - +0.8 670,245 - -0.7 670,285 + Atu0674 0.10 -0.9 670,285 + Atu0674 0.10 -2.1 670,319 + Atu0674 0.23 -1.5 670,383 + Atu0674 0.47 +0.1 670,498 + Atu0674 0.89 +0.4 670,516 + -0.6 670,524 - -3.5 670,529 - +1.0 670,534 - Atu0675 0.11 -0.2 670,841 + -0.7 670,849 + -1.6
Or see this region's nucleotide sequence