Experiment: AgroPhage_E04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0542 and Atu0543 are separated by 241 nucleotides Atu0543 and Atu0544 are separated by 25 nucleotides Atu0544 and Atu0545 are separated by 123 nucleotides
Atu0542: Atu0542 - flagellin, at 531,936 to 532,877
Atu0542
Atu0543: Atu0543 - flaB, at 533,119 to 534,081
Atu0543
Atu0544: Atu0544 - hypothetical protein, at 534,107 to 534,364
Atu0544
Atu0545: Atu0545 - flagella associated protein, at 534,488 to 535,408
Atu0545
Position (kb) 533
534
535 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 532.293 kb on - strand, within Atu0542 at 532.308 kb on - strand, within Atu0542 at 532.416 kb on + strand, within Atu0542 at 532.464 kb on - strand, within Atu0542 at 532.511 kb on - strand, within Atu0542 at 532.516 kb on - strand, within Atu0542 at 532.538 kb on + strand, within Atu0542 at 532.651 kb on + strand, within Atu0542 at 532.674 kb on + strand, within Atu0542 at 532.786 kb on + strand at 532.838 kb on - strand at 533.055 kb on + strand at 533.055 kb on + strand at 533.063 kb on - strand at 533.172 kb on + strand at 533.185 kb on + strand at 533.204 kb on + strand at 533.204 kb on + strand at 533.212 kb on - strand at 533.212 kb on - strand at 533.212 kb on - strand at 533.212 kb on - strand at 533.212 kb on - strand at 533.212 kb on - strand at 533.270 kb on + strand, within Atu0543 at 533.304 kb on + strand, within Atu0543 at 533.312 kb on + strand, within Atu0543 at 533.376 kb on + strand, within Atu0543 at 533.376 kb on + strand, within Atu0543 at 533.424 kb on + strand, within Atu0543 at 533.438 kb on + strand, within Atu0543 at 533.470 kb on + strand, within Atu0543 at 533.478 kb on - strand, within Atu0543 at 533.499 kb on + strand, within Atu0543 at 533.507 kb on - strand, within Atu0543 at 533.538 kb on - strand, within Atu0543 at 533.560 kb on - strand, within Atu0543 at 533.622 kb on + strand, within Atu0543 at 533.630 kb on - strand, within Atu0543 at 533.637 kb on + strand, within Atu0543 at 533.645 kb on - strand, within Atu0543 at 533.650 kb on - strand, within Atu0543 at 533.703 kb on - strand, within Atu0543 at 533.753 kb on + strand, within Atu0543 at 533.855 kb on + strand, within Atu0543 at 533.855 kb on + strand, within Atu0543 at 533.863 kb on - strand, within Atu0543 at 533.952 kb on - strand, within Atu0543 at 533.956 kb on + strand, within Atu0543 at 534.026 kb on - strand at 534.105 kb on + strand at 534.201 kb on + strand, within Atu0544 at 534.201 kb on + strand, within Atu0544 at 534.209 kb on - strand, within Atu0544 at 534.371 kb on + strand at 534.389 kb on - strand at 534.396 kb on - strand at 534.530 kb on + strand at 534.547 kb on - strand at 534.573 kb on + strand at 534.573 kb on + strand at 534.573 kb on + strand at 534.581 kb on - strand, within Atu0545 at 534.620 kb on + strand, within Atu0545 at 534.620 kb on + strand, within Atu0545 at 534.639 kb on + strand, within Atu0545 at 534.647 kb on - strand, within Atu0545 at 534.743 kb on + strand, within Atu0545 at 534.891 kb on + strand, within Atu0545
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_E04 remove 532,293 - Atu0542 0.38 -0.6 532,308 - Atu0542 0.39 +0.7 532,416 + Atu0542 0.51 -3.0 532,464 - Atu0542 0.56 -0.2 532,511 - Atu0542 0.61 -1.7 532,516 - Atu0542 0.62 -2.1 532,538 + Atu0542 0.64 -1.7 532,651 + Atu0542 0.76 +0.9 532,674 + Atu0542 0.78 -1.5 532,786 + -0.0 532,838 - +0.2 533,055 + -1.4 533,055 + +0.2 533,063 - +0.2 533,172 + +2.1 533,185 + +0.7 533,204 + -0.1 533,204 + -2.0 533,212 - +0.0 533,212 - +1.2 533,212 - +1.0 533,212 - -0.8 533,212 - -0.6 533,212 - +1.2 533,270 + Atu0543 0.16 -1.9 533,304 + Atu0543 0.19 -0.8 533,312 + Atu0543 0.20 +0.2 533,376 + Atu0543 0.27 +0.9 533,376 + Atu0543 0.27 +0.5 533,424 + Atu0543 0.32 +1.0 533,438 + Atu0543 0.33 -0.5 533,470 + Atu0543 0.36 +2.0 533,478 - Atu0543 0.37 +0.4 533,499 + Atu0543 0.39 -0.9 533,507 - Atu0543 0.40 +0.4 533,538 - Atu0543 0.44 +1.6 533,560 - Atu0543 0.46 +0.6 533,622 + Atu0543 0.52 +0.1 533,630 - Atu0543 0.53 -0.6 533,637 + Atu0543 0.54 +1.1 533,645 - Atu0543 0.55 +0.7 533,650 - Atu0543 0.55 +2.2 533,703 - Atu0543 0.61 +1.2 533,753 + Atu0543 0.66 -0.6 533,855 + Atu0543 0.76 +0.6 533,855 + Atu0543 0.76 +2.0 533,863 - Atu0543 0.77 +1.2 533,952 - Atu0543 0.87 +2.9 533,956 + Atu0543 0.87 -0.1 534,026 - -0.1 534,105 + +0.3 534,201 + Atu0544 0.36 +1.5 534,201 + Atu0544 0.36 -1.7 534,209 - Atu0544 0.40 -1.9 534,371 + +1.5 534,389 - -1.1 534,396 - -1.7 534,530 + +0.2 534,547 - +1.6 534,573 + -1.8 534,573 + +0.3 534,573 + +0.3 534,581 - Atu0545 0.10 +0.8 534,620 + Atu0545 0.14 +0.6 534,620 + Atu0545 0.14 -0.9 534,639 + Atu0545 0.16 -0.4 534,647 - Atu0545 0.17 +0.2 534,743 + Atu0545 0.28 +0.4 534,891 + Atu0545 0.44 +1.5
Or see this region's nucleotide sequence