Experiment: AgroPhage_E04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0524 and Atu0525 overlap by 1 nucleotides Atu0525 and Atu0526 are separated by 148 nucleotides
Atu0524: Atu0524 - transcriptional regulator, LuxR family, at 514,221 to 514,901
Atu0524
Atu0525: Atu0525 - transcriptional regulator, LuxR family, at 514,901 to 515,656
Atu0525
Atu0526: Atu0526 - methyl-accepting chemotaxis protein, at 515,805 to 517,652
Atu0526
Position (kb) 514
515
516 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 513.915 kb on + strand at 514.123 kb on - strand at 514.150 kb on + strand at 514.217 kb on + strand at 514.223 kb on + strand at 514.231 kb on - strand at 514.267 kb on - strand at 514.305 kb on - strand, within Atu0524 at 514.305 kb on - strand, within Atu0524 at 514.426 kb on + strand, within Atu0524 at 514.516 kb on + strand, within Atu0524 at 514.531 kb on + strand, within Atu0524 at 514.561 kb on + strand, within Atu0524 at 514.569 kb on - strand, within Atu0524 at 514.750 kb on - strand, within Atu0524 at 514.757 kb on + strand, within Atu0524 at 514.886 kb on + strand at 514.919 kb on - strand at 514.944 kb on - strand at 515.258 kb on + strand, within Atu0525 at 515.317 kb on + strand, within Atu0525 at 515.443 kb on + strand, within Atu0525 at 515.527 kb on + strand, within Atu0525 at 515.546 kb on - strand, within Atu0525 at 515.547 kb on + strand, within Atu0525 at 515.569 kb on - strand, within Atu0525 at 515.649 kb on - strand at 515.666 kb on + strand at 515.666 kb on + strand at 515.674 kb on - strand at 515.674 kb on - strand at 515.679 kb on + strand at 515.687 kb on - strand at 515.819 kb on + strand at 515.827 kb on - strand at 515.840 kb on + strand at 515.963 kb on + strand at 515.968 kb on + strand at 515.971 kb on - strand at 516.024 kb on + strand, within Atu0526 at 516.033 kb on + strand, within Atu0526 at 516.034 kb on + strand, within Atu0526 at 516.042 kb on - strand, within Atu0526 at 516.042 kb on - strand, within Atu0526 at 516.201 kb on - strand, within Atu0526 at 516.292 kb on + strand, within Atu0526 at 516.374 kb on + strand, within Atu0526 at 516.382 kb on - strand, within Atu0526 at 516.382 kb on - strand, within Atu0526 at 516.631 kb on - strand, within Atu0526
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_E04 remove 513,915 + +0.3 514,123 - +0.4 514,150 + +0.1 514,217 + +6.9 514,223 + +0.8 514,231 - +3.1 514,267 - +6.0 514,305 - Atu0524 0.12 +6.8 514,305 - Atu0524 0.12 +6.9 514,426 + Atu0524 0.30 +7.1 514,516 + Atu0524 0.43 +7.1 514,531 + Atu0524 0.46 +6.8 514,561 + Atu0524 0.50 +6.7 514,569 - Atu0524 0.51 +6.9 514,750 - Atu0524 0.78 +6.7 514,757 + Atu0524 0.79 +7.5 514,886 + +0.4 514,919 - -0.8 514,944 - +3.2 515,258 + Atu0525 0.47 +7.2 515,317 + Atu0525 0.55 +7.3 515,443 + Atu0525 0.72 +6.7 515,527 + Atu0525 0.83 +6.9 515,546 - Atu0525 0.85 +7.1 515,547 + Atu0525 0.85 +7.3 515,569 - Atu0525 0.88 +8.0 515,649 - +7.3 515,666 + -0.6 515,666 + +0.1 515,674 - +0.2 515,674 - +0.9 515,679 + -0.0 515,687 - -1.7 515,819 + +0.1 515,827 - -0.7 515,840 + -0.9 515,963 + -2.3 515,968 + +0.5 515,971 - +0.8 516,024 + Atu0526 0.12 -1.3 516,033 + Atu0526 0.12 -0.8 516,034 + Atu0526 0.12 -0.3 516,042 - Atu0526 0.13 -0.4 516,042 - Atu0526 0.13 +0.7 516,201 - Atu0526 0.21 -0.3 516,292 + Atu0526 0.26 +0.1 516,374 + Atu0526 0.31 +0.4 516,382 - Atu0526 0.31 +1.4 516,382 - Atu0526 0.31 +0.3 516,631 - Atu0526 0.45 -2.0
Or see this region's nucleotide sequence