Experiment: AgroPhage_E04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0278 and Atu0279 overlap by 2 nucleotides Atu0279 and Atu0280 are separated by 141 nucleotides Atu0280 and Atu0281 are separated by 74 nucleotides
Atu0278: Atu0278 - hypothetical protein, at 272,904 to 273,791
Atu0278
Atu0279: Atu0279 - transcriptional regulator, TetR family, at 273,790 to 274,368
Atu0279
Atu0280: Atu0280 - hypothetical protein, at 274,510 to 274,998
Atu0280
Atu0281: Atu0281 - GMP synthase, at 275,073 to 276,650
Atu0281
Position (kb) 274
275 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 273.510 kb on + strand, within Atu0278 at 273.584 kb on + strand, within Atu0278 at 273.609 kb on + strand, within Atu0278 at 273.635 kb on - strand, within Atu0278 at 273.639 kb on + strand, within Atu0278 at 273.737 kb on + strand at 273.799 kb on + strand at 273.833 kb on + strand at 273.843 kb on + strand at 273.843 kb on + strand at 273.843 kb on + strand at 273.856 kb on + strand, within Atu0279 at 273.856 kb on + strand, within Atu0279 at 273.948 kb on + strand, within Atu0279 at 274.145 kb on + strand, within Atu0279 at 274.208 kb on + strand, within Atu0279 at 274.223 kb on + strand, within Atu0279 at 274.223 kb on + strand, within Atu0279 at 274.248 kb on + strand, within Atu0279 at 274.248 kb on + strand, within Atu0279 at 274.248 kb on + strand, within Atu0279 at 274.278 kb on + strand, within Atu0279 at 274.283 kb on + strand, within Atu0279 at 274.353 kb on + strand at 274.361 kb on - strand at 274.376 kb on - strand at 274.433 kb on - strand at 274.446 kb on + strand at 274.544 kb on - strand at 274.663 kb on - strand, within Atu0280 at 274.791 kb on - strand, within Atu0280 at 274.861 kb on - strand, within Atu0280 at 274.882 kb on + strand, within Atu0280 at 275.019 kb on - strand at 275.019 kb on - strand at 275.023 kb on + strand at 275.023 kb on + strand at 275.035 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_E04 remove 273,510 + Atu0278 0.68 -0.1 273,584 + Atu0278 0.77 -2.8 273,609 + Atu0278 0.79 +0.3 273,635 - Atu0278 0.82 -0.3 273,639 + Atu0278 0.83 -0.4 273,737 + -0.2 273,799 + -0.1 273,833 + -0.5 273,843 + +2.6 273,843 + +1.0 273,843 + +0.2 273,856 + Atu0279 0.11 -0.4 273,856 + Atu0279 0.11 +1.4 273,948 + Atu0279 0.27 -0.3 274,145 + Atu0279 0.61 +0.4 274,208 + Atu0279 0.72 -0.4 274,223 + Atu0279 0.75 -1.9 274,223 + Atu0279 0.75 +0.8 274,248 + Atu0279 0.79 -0.2 274,248 + Atu0279 0.79 -0.4 274,248 + Atu0279 0.79 +0.1 274,278 + Atu0279 0.84 +0.8 274,283 + Atu0279 0.85 +1.2 274,353 + +0.8 274,361 - +1.2 274,376 - -0.6 274,433 - -0.6 274,446 + +1.2 274,544 - +0.5 274,663 - Atu0280 0.31 +1.9 274,791 - Atu0280 0.57 -1.9 274,861 - Atu0280 0.72 +1.8 274,882 + Atu0280 0.76 +1.0 275,019 - +1.2 275,019 - +1.1 275,023 + +0.5 275,023 + +0.0 275,035 + -0.2
Or see this region's nucleotide sequence