Experiment: AgroPhage_E04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0241 and Atu0242 are separated by 72 nucleotides Atu0242 and Atu0243 overlap by 4 nucleotides Atu0243 and Atu8117 are separated by 66 nucleotides
Atu0241: Atu0241 - GTP-binding protein LepA, at 240,039 to 241,865
Atu0241
Atu0242: Atu0242 - carbon-nitrogen hydrolase, at 241,938 to 242,807
Atu0242
Atu0243: Atu0243 - hypothetical protein, at 242,804 to 243,415
Atu0243
Atu8117: Atu8117 - hypothetical protein, at 243,482 to 243,883
Atu8117
Position (kb) 241
242
243 Strain fitness (log2 ratio) -2
-1
0
1
2 at 241.960 kb on - strand at 241.982 kb on + strand at 242.111 kb on + strand, within Atu0242 at 242.154 kb on + strand, within Atu0242 at 242.162 kb on - strand, within Atu0242 at 242.282 kb on + strand, within Atu0242 at 242.287 kb on + strand, within Atu0242 at 242.348 kb on - strand, within Atu0242 at 242.465 kb on - strand, within Atu0242 at 242.535 kb on - strand, within Atu0242 at 242.569 kb on + strand, within Atu0242 at 242.576 kb on + strand, within Atu0242 at 242.622 kb on + strand, within Atu0242 at 242.756 kb on + strand at 242.761 kb on + strand at 242.761 kb on + strand at 242.764 kb on - strand at 242.764 kb on - strand at 243.067 kb on + strand, within Atu0243 at 243.067 kb on + strand, within Atu0243 at 243.067 kb on + strand, within Atu0243 at 243.067 kb on + strand, within Atu0243 at 243.067 kb on + strand, within Atu0243 at 243.067 kb on + strand, within Atu0243 at 243.075 kb on - strand, within Atu0243 at 243.075 kb on - strand, within Atu0243 at 243.075 kb on - strand, within Atu0243 at 243.075 kb on - strand, within Atu0243 at 243.075 kb on - strand, within Atu0243 at 243.135 kb on - strand, within Atu0243 at 243.142 kb on - strand, within Atu0243 at 243.159 kb on + strand, within Atu0243 at 243.159 kb on + strand, within Atu0243 at 243.167 kb on - strand, within Atu0243 at 243.167 kb on - strand, within Atu0243 at 243.169 kb on + strand, within Atu0243 at 243.310 kb on - strand, within Atu0243 at 243.344 kb on - strand, within Atu0243 at 243.345 kb on + strand, within Atu0243 at 243.345 kb on + strand, within Atu0243 at 243.425 kb on + strand at 243.433 kb on - strand at 243.433 kb on - strand at 243.518 kb on - strand at 243.534 kb on - strand, within Atu8117 at 243.580 kb on - strand, within Atu8117 at 243.713 kb on - strand, within Atu8117
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_E04 remove 241,960 - +0.6 241,982 + -0.7 242,111 + Atu0242 0.20 -0.2 242,154 + Atu0242 0.25 +0.8 242,162 - Atu0242 0.26 -0.6 242,282 + Atu0242 0.40 -0.2 242,287 + Atu0242 0.40 -1.4 242,348 - Atu0242 0.47 -0.8 242,465 - Atu0242 0.61 +1.5 242,535 - Atu0242 0.69 -2.6 242,569 + Atu0242 0.73 -2.6 242,576 + Atu0242 0.73 +0.3 242,622 + Atu0242 0.79 -1.5 242,756 + -1.2 242,761 + -0.6 242,761 + -0.7 242,764 - -2.4 242,764 - -2.1 243,067 + Atu0243 0.43 -0.6 243,067 + Atu0243 0.43 +0.8 243,067 + Atu0243 0.43 -1.4 243,067 + Atu0243 0.43 -0.2 243,067 + Atu0243 0.43 -0.1 243,067 + Atu0243 0.43 +0.7 243,075 - Atu0243 0.44 +0.3 243,075 - Atu0243 0.44 -0.4 243,075 - Atu0243 0.44 -1.2 243,075 - Atu0243 0.44 +0.6 243,075 - Atu0243 0.44 +2.1 243,135 - Atu0243 0.54 -0.7 243,142 - Atu0243 0.55 +0.0 243,159 + Atu0243 0.58 -0.6 243,159 + Atu0243 0.58 +0.0 243,167 - Atu0243 0.59 +0.0 243,167 - Atu0243 0.59 +1.2 243,169 + Atu0243 0.60 +0.3 243,310 - Atu0243 0.83 +0.2 243,344 - Atu0243 0.88 -2.7 243,345 + Atu0243 0.88 +0.2 243,345 + Atu0243 0.88 -2.2 243,425 + -1.3 243,433 - -0.1 243,433 - +0.5 243,518 - -0.7 243,534 - Atu8117 0.13 -1.8 243,580 - Atu8117 0.24 -1.7 243,713 - Atu8117 0.57 +0.2
Or see this region's nucleotide sequence