Experiment: AgroPhage_D10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3762 and Atu3763 are separated by 80 nucleotides Atu3763 and Atu3764 are separated by 317 nucleotides
Atu3762: Atu3762 - pyruvate kinase, at 841,241 to 842,680
Atu3762
Atu3763: Atu3763 - hypothetical protein, at 842,761 to 844,524
Atu3763
Atu3764: Atu3764 - sigma 54 dependent transcriptional activator, at 844,842 to 846,383
Atu3764
Position (kb) 842
843
844
845 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 841.765 kb on - strand, within Atu3762 at 842.914 kb on - strand at 843.045 kb on + strand, within Atu3763 at 843.082 kb on + strand, within Atu3763 at 843.248 kb on + strand, within Atu3763 at 843.985 kb on - strand, within Atu3763 at 844.730 kb on + strand at 844.825 kb on - strand at 844.857 kb on + strand at 844.938 kb on - strand at 844.985 kb on + strand at 845.095 kb on - strand, within Atu3764 at 845.100 kb on + strand, within Atu3764 at 845.185 kb on - strand, within Atu3764 at 845.240 kb on + strand, within Atu3764 at 845.248 kb on - strand, within Atu3764 at 845.250 kb on - strand, within Atu3764 at 845.258 kb on + strand, within Atu3764 at 845.356 kb on + strand, within Atu3764 at 845.356 kb on + strand, within Atu3764 at 845.364 kb on - strand, within Atu3764 at 845.436 kb on - strand, within Atu3764 at 845.508 kb on - strand, within Atu3764 at 845.508 kb on - strand, within Atu3764 at 845.508 kb on - strand, within Atu3764
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_D10 remove 841,765 - Atu3762 0.36 +4.0 842,914 - +0.9 843,045 + Atu3763 0.16 +5.7 843,082 + Atu3763 0.18 +4.0 843,248 + Atu3763 0.28 +5.0 843,985 - Atu3763 0.69 +2.6 844,730 + -0.8 844,825 - +0.8 844,857 + -1.1 844,938 - -2.1 844,985 + -0.4 845,095 - Atu3764 0.16 +0.9 845,100 + Atu3764 0.17 +0.9 845,185 - Atu3764 0.22 -3.2 845,240 + Atu3764 0.26 +1.1 845,248 - Atu3764 0.26 +1.4 845,250 - Atu3764 0.26 -1.2 845,258 + Atu3764 0.27 +0.2 845,356 + Atu3764 0.33 +2.0 845,356 + Atu3764 0.33 +1.1 845,364 - Atu3764 0.34 +1.2 845,436 - Atu3764 0.39 +0.8 845,508 - Atu3764 0.43 -0.8 845,508 - Atu3764 0.43 -1.9 845,508 - Atu3764 0.43 +0.0
Or see this region's nucleotide sequence