Experiment: AgroPhage_D10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3446 and Atu3447 overlap by 10 nucleotides Atu3447 and Atu3448 are separated by 7 nucleotides Atu3448 and Atu3450 are separated by 347 nucleotides
Atu3446: Atu3446 - monooxygenase, at 494,667 to 495,836
Atu3446
Atu3447: Atu3447 - hypothetical protein, at 495,827 to 496,720
Atu3447
Atu3448: Atu3448 - dibenzothiophene desulfurization protein B, at 496,728 to 497,780
Atu3448
Atu3450: Atu3450 - nitrilotriacetate monooxygenase, at 498,128 to 499,435
Atu3450
Position (kb) 496
497
498 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 495.757 kb on - strand at 495.800 kb on + strand at 495.800 kb on + strand at 495.800 kb on + strand at 495.808 kb on - strand at 495.964 kb on - strand, within Atu3447 at 496.044 kb on - strand, within Atu3447 at 496.044 kb on - strand, within Atu3447 at 496.137 kb on - strand, within Atu3447 at 496.244 kb on - strand, within Atu3447 at 496.474 kb on - strand, within Atu3447 at 496.491 kb on - strand, within Atu3447 at 496.538 kb on + strand, within Atu3447 at 496.724 kb on - strand at 496.748 kb on - strand at 496.753 kb on + strand at 496.771 kb on + strand at 496.774 kb on - strand at 496.779 kb on - strand at 496.966 kb on + strand, within Atu3448 at 497.000 kb on - strand, within Atu3448 at 497.000 kb on - strand, within Atu3448 at 497.198 kb on - strand, within Atu3448 at 497.494 kb on + strand, within Atu3448 at 497.494 kb on + strand, within Atu3448 at 497.631 kb on - strand, within Atu3448 at 497.636 kb on - strand, within Atu3448 at 497.719 kb on + strand at 497.728 kb on + strand at 497.738 kb on - strand at 497.741 kb on - strand at 497.746 kb on - strand at 497.750 kb on + strand at 497.765 kb on + strand at 497.825 kb on - strand at 498.208 kb on - strand at 498.314 kb on + strand, within Atu3450 at 498.317 kb on - strand, within Atu3450 at 498.403 kb on - strand, within Atu3450 at 498.572 kb on + strand, within Atu3450
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_D10 remove 495,757 - -0.6 495,800 + -0.6 495,800 + -1.5 495,800 + -1.3 495,808 - -0.0 495,964 - Atu3447 0.15 +4.2 496,044 - Atu3447 0.24 +1.1 496,044 - Atu3447 0.24 -1.5 496,137 - Atu3447 0.35 +1.4 496,244 - Atu3447 0.47 +1.9 496,474 - Atu3447 0.72 -0.5 496,491 - Atu3447 0.74 -0.3 496,538 + Atu3447 0.80 -0.5 496,724 - +4.2 496,748 - -0.9 496,753 + +1.2 496,771 + +2.1 496,774 - -1.4 496,779 - -1.4 496,966 + Atu3448 0.23 +1.4 497,000 - Atu3448 0.26 -0.6 497,000 - Atu3448 0.26 +0.8 497,198 - Atu3448 0.45 -0.6 497,494 + Atu3448 0.73 +0.7 497,494 + Atu3448 0.73 +0.9 497,631 - Atu3448 0.86 +0.2 497,636 - Atu3448 0.86 -0.0 497,719 + -1.9 497,728 + +0.4 497,738 - -0.3 497,741 - +1.1 497,746 - -0.2 497,750 + +0.9 497,765 + -0.2 497,825 - +1.4 498,208 - -1.9 498,314 + Atu3450 0.14 -0.2 498,317 - Atu3450 0.14 -1.6 498,403 - Atu3450 0.21 -0.8 498,572 + Atu3450 0.34 +0.3
Or see this region's nucleotide sequence