Experiment: AgroPhage_D10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3433 and Atu3434 are separated by 269 nucleotides Atu3434 and Atu3435 overlap by 4 nucleotides Atu3435 and Atu3436 overlap by 4 nucleotides
Atu3433: Atu3433 - oligopeptide ABC transporter substrate-binding protein, at 478,878 to 480,485
Atu3433
Atu3434: Atu3434 - oligopeptide ABC transporter permease, at 480,755 to 481,744
Atu3434
Atu3435: Atu3435 - oligopeptide ABC transporter permease, at 481,741 to 482,736
Atu3435
Atu3436: Atu3436 - oligopeptide ABC transporter ATPase, at 482,733 to 483,731
Atu3436
Position (kb) 480
481
482 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 479.825 kb on + strand, within Atu3433 at 479.881 kb on - strand, within Atu3433 at 479.887 kb on - strand, within Atu3433 at 479.902 kb on - strand, within Atu3433 at 479.909 kb on - strand, within Atu3433 at 479.917 kb on - strand, within Atu3433 at 480.013 kb on + strand, within Atu3433 at 480.069 kb on + strand, within Atu3433 at 480.141 kb on + strand, within Atu3433 at 480.149 kb on - strand, within Atu3433 at 480.149 kb on - strand, within Atu3433 at 480.149 kb on - strand, within Atu3433 at 480.164 kb on + strand, within Atu3433 at 480.174 kb on + strand, within Atu3433 at 480.190 kb on + strand, within Atu3433 at 480.190 kb on + strand, within Atu3433 at 480.198 kb on - strand, within Atu3433 at 480.277 kb on + strand, within Atu3433 at 480.306 kb on + strand, within Atu3433 at 480.325 kb on + strand at 480.344 kb on + strand at 480.990 kb on + strand, within Atu3434 at 481.046 kb on - strand, within Atu3434 at 481.089 kb on - strand, within Atu3434 at 481.131 kb on - strand, within Atu3434 at 481.200 kb on - strand, within Atu3434 at 481.228 kb on - strand, within Atu3434 at 481.281 kb on + strand, within Atu3434 at 481.296 kb on + strand, within Atu3434 at 481.343 kb on - strand, within Atu3434 at 481.388 kb on + strand, within Atu3434 at 481.396 kb on - strand, within Atu3434 at 481.482 kb on + strand, within Atu3434 at 481.495 kb on - strand, within Atu3434 at 481.650 kb on - strand at 481.763 kb on - strand at 481.773 kb on - strand at 481.800 kb on - strand at 481.969 kb on - strand, within Atu3435 at 481.990 kb on + strand, within Atu3435 at 482.095 kb on + strand, within Atu3435 at 482.103 kb on - strand, within Atu3435 at 482.103 kb on - strand, within Atu3435 at 482.109 kb on + strand, within Atu3435 at 482.302 kb on + strand, within Atu3435 at 482.329 kb on - strand, within Atu3435 at 482.607 kb on + strand, within Atu3435 at 482.617 kb on + strand, within Atu3435 at 482.625 kb on - strand, within Atu3435 at 482.630 kb on - strand, within Atu3435 at 482.703 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_D10 remove 479,825 + Atu3433 0.59 -1.5 479,881 - Atu3433 0.62 -0.1 479,887 - Atu3433 0.63 +1.8 479,902 - Atu3433 0.64 -3.2 479,909 - Atu3433 0.64 -1.8 479,917 - Atu3433 0.65 -0.0 480,013 + Atu3433 0.71 +0.3 480,069 + Atu3433 0.74 +1.8 480,141 + Atu3433 0.79 +0.5 480,149 - Atu3433 0.79 -2.3 480,149 - Atu3433 0.79 +0.8 480,149 - Atu3433 0.79 +0.5 480,164 + Atu3433 0.80 +0.0 480,174 + Atu3433 0.81 +0.7 480,190 + Atu3433 0.82 -2.0 480,190 + Atu3433 0.82 -0.1 480,198 - Atu3433 0.82 +0.6 480,277 + Atu3433 0.87 -0.2 480,306 + Atu3433 0.89 -1.6 480,325 + -0.7 480,344 + -0.1 480,990 + Atu3434 0.24 -0.3 481,046 - Atu3434 0.29 -0.8 481,089 - Atu3434 0.34 -1.3 481,131 - Atu3434 0.38 +3.3 481,200 - Atu3434 0.45 +0.7 481,228 - Atu3434 0.48 +0.1 481,281 + Atu3434 0.53 -1.6 481,296 + Atu3434 0.55 -0.3 481,343 - Atu3434 0.59 +0.7 481,388 + Atu3434 0.64 -0.5 481,396 - Atu3434 0.65 -0.8 481,482 + Atu3434 0.73 +2.2 481,495 - Atu3434 0.75 +2.4 481,650 - -1.8 481,763 - -0.4 481,773 - -0.9 481,800 - +0.9 481,969 - Atu3435 0.23 -0.3 481,990 + Atu3435 0.25 -0.8 482,095 + Atu3435 0.36 -0.9 482,103 - Atu3435 0.36 -0.1 482,103 - Atu3435 0.36 +1.2 482,109 + Atu3435 0.37 +0.5 482,302 + Atu3435 0.56 +0.7 482,329 - Atu3435 0.59 +0.4 482,607 + Atu3435 0.87 -0.8 482,617 + Atu3435 0.88 +0.2 482,625 - Atu3435 0.89 -0.1 482,630 - Atu3435 0.89 -0.3 482,703 + -0.8
Or see this region's nucleotide sequence