Experiment: AgroPhage_D10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3357 and Atu3358 are separated by 295 nucleotides Atu3358 and Atu3359 overlap by 4 nucleotides Atu3359 and Atu3360 are separated by 12 nucleotides
Atu3357: Atu3357 - amino acid ABC transporter substrate-binding protein, at 395,279 to 396,118
Atu3357
Atu3358: Atu3358 - amino acid ABC transporter permease, at 396,414 to 397,046
Atu3358
Atu3359: Atu3359 - amino acid ABC transporter permease, at 397,043 to 397,825
Atu3359
Atu3360: Atu3360 - amino acid ABC transporter ATPase/permease, at 397,838 to 398,653
Atu3360
Position (kb) 396
397
398 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 395.419 kb on + strand, within Atu3357 at 395.491 kb on + strand, within Atu3357 at 395.511 kb on + strand, within Atu3357 at 395.519 kb on - strand, within Atu3357 at 395.519 kb on - strand, within Atu3357 at 395.526 kb on + strand, within Atu3357 at 395.540 kb on + strand, within Atu3357 at 395.542 kb on + strand, within Atu3357 at 395.708 kb on + strand, within Atu3357 at 395.742 kb on + strand, within Atu3357 at 395.778 kb on + strand, within Atu3357 at 395.781 kb on - strand, within Atu3357 at 395.785 kb on + strand, within Atu3357 at 395.785 kb on + strand, within Atu3357 at 395.785 kb on + strand, within Atu3357 at 395.785 kb on + strand, within Atu3357 at 395.793 kb on - strand, within Atu3357 at 395.793 kb on - strand, within Atu3357 at 395.793 kb on - strand, within Atu3357 at 395.793 kb on - strand, within Atu3357 at 395.793 kb on - strand, within Atu3357 at 395.793 kb on - strand, within Atu3357 at 395.867 kb on + strand, within Atu3357 at 395.882 kb on + strand, within Atu3357 at 395.882 kb on + strand, within Atu3357 at 395.882 kb on + strand, within Atu3357 at 395.882 kb on + strand, within Atu3357 at 395.882 kb on + strand, within Atu3357 at 395.887 kb on + strand, within Atu3357 at 395.978 kb on - strand, within Atu3357 at 395.979 kb on - strand, within Atu3357 at 396.060 kb on - strand at 396.089 kb on - strand at 396.100 kb on + strand at 396.336 kb on - strand at 396.387 kb on + strand at 396.387 kb on + strand at 396.485 kb on - strand, within Atu3358 at 396.490 kb on - strand, within Atu3358 at 396.492 kb on + strand, within Atu3358 at 396.626 kb on - strand, within Atu3358 at 396.626 kb on - strand, within Atu3358 at 396.626 kb on - strand, within Atu3358 at 396.626 kb on - strand, within Atu3358 at 396.696 kb on + strand, within Atu3358 at 396.906 kb on + strand, within Atu3358 at 396.911 kb on + strand, within Atu3358 at 396.919 kb on - strand, within Atu3358 at 396.921 kb on - strand, within Atu3358 at 396.933 kb on + strand, within Atu3358 at 397.000 kb on + strand at 397.034 kb on - strand at 397.097 kb on + strand at 397.105 kb on + strand at 397.128 kb on + strand, within Atu3359 at 397.166 kb on - strand, within Atu3359 at 397.327 kb on - strand, within Atu3359 at 397.338 kb on + strand, within Atu3359 at 397.367 kb on + strand, within Atu3359 at 397.375 kb on - strand, within Atu3359 at 397.405 kb on + strand, within Atu3359 at 397.426 kb on + strand, within Atu3359 at 397.434 kb on - strand, within Atu3359 at 397.434 kb on - strand, within Atu3359 at 397.519 kb on - strand, within Atu3359 at 397.540 kb on - strand, within Atu3359 at 397.541 kb on - strand, within Atu3359 at 397.566 kb on + strand, within Atu3359 at 397.572 kb on + strand, within Atu3359 at 397.579 kb on - strand, within Atu3359 at 397.580 kb on - strand, within Atu3359 at 397.754 kb on + strand at 397.824 kb on + strand at 397.832 kb on - strand at 397.848 kb on - strand at 397.848 kb on - strand at 397.848 kb on - strand at 397.861 kb on - strand at 397.900 kb on + strand at 397.933 kb on + strand, within Atu3360 at 397.944 kb on - strand, within Atu3360 at 398.015 kb on + strand, within Atu3360 at 398.023 kb on - strand, within Atu3360
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_D10 remove 395,419 + Atu3357 0.17 +0.3 395,491 + Atu3357 0.25 -1.0 395,511 + Atu3357 0.28 -0.3 395,519 - Atu3357 0.29 -0.7 395,519 - Atu3357 0.29 -1.6 395,526 + Atu3357 0.29 -1.4 395,540 + Atu3357 0.31 -1.7 395,542 + Atu3357 0.31 +2.2 395,708 + Atu3357 0.51 -0.7 395,742 + Atu3357 0.55 -0.6 395,778 + Atu3357 0.59 +1.0 395,781 - Atu3357 0.60 -0.9 395,785 + Atu3357 0.60 -3.8 395,785 + Atu3357 0.60 +0.5 395,785 + Atu3357 0.60 -0.7 395,785 + Atu3357 0.60 +4.2 395,793 - Atu3357 0.61 +0.7 395,793 - Atu3357 0.61 -1.7 395,793 - Atu3357 0.61 -0.9 395,793 - Atu3357 0.61 -0.3 395,793 - Atu3357 0.61 -1.1 395,793 - Atu3357 0.61 -1.0 395,867 + Atu3357 0.70 -2.5 395,882 + Atu3357 0.72 +0.6 395,882 + Atu3357 0.72 +2.0 395,882 + Atu3357 0.72 +0.1 395,882 + Atu3357 0.72 -0.0 395,882 + Atu3357 0.72 +0.2 395,887 + Atu3357 0.72 -0.8 395,978 - Atu3357 0.83 -1.4 395,979 - Atu3357 0.83 +1.3 396,060 - -0.2 396,089 - +2.1 396,100 + -0.6 396,336 - +0.8 396,387 + -1.3 396,387 + +0.4 396,485 - Atu3358 0.11 +0.2 396,490 - Atu3358 0.12 -1.8 396,492 + Atu3358 0.12 -0.8 396,626 - Atu3358 0.33 -2.4 396,626 - Atu3358 0.33 +0.4 396,626 - Atu3358 0.33 +0.7 396,626 - Atu3358 0.33 -0.0 396,696 + Atu3358 0.45 +0.2 396,906 + Atu3358 0.78 -0.1 396,911 + Atu3358 0.79 -0.7 396,919 - Atu3358 0.80 +1.4 396,921 - Atu3358 0.80 -0.9 396,933 + Atu3358 0.82 +0.3 397,000 + -0.9 397,034 - +0.1 397,097 + -0.8 397,105 + -0.0 397,128 + Atu3359 0.11 -2.4 397,166 - Atu3359 0.16 -0.9 397,327 - Atu3359 0.36 +1.7 397,338 + Atu3359 0.38 -0.4 397,367 + Atu3359 0.41 -2.2 397,375 - Atu3359 0.42 +0.7 397,405 + Atu3359 0.46 +0.7 397,426 + Atu3359 0.49 -0.5 397,434 - Atu3359 0.50 +0.1 397,434 - Atu3359 0.50 -2.2 397,519 - Atu3359 0.61 +0.2 397,540 - Atu3359 0.63 -1.2 397,541 - Atu3359 0.64 +1.1 397,566 + Atu3359 0.67 -0.0 397,572 + Atu3359 0.68 -1.3 397,579 - Atu3359 0.68 -0.9 397,580 - Atu3359 0.69 +0.7 397,754 + -1.4 397,824 + -1.3 397,832 - -1.3 397,848 - -0.2 397,848 - +0.3 397,848 - -2.0 397,861 - -0.2 397,900 + +0.3 397,933 + Atu3360 0.12 +1.9 397,944 - Atu3360 0.13 -1.4 398,015 + Atu3360 0.22 +0.0 398,023 - Atu3360 0.23 +0.5
Or see this region's nucleotide sequence