Experiment: AgroPhage_D10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3251 and Atu3252 are separated by 165 nucleotides Atu3252 and Atu3253 are separated by 62 nucleotides Atu3253 and Atu3254 are separated by 60 nucleotides Atu3254 and Atu3255 are separated by 67 nucleotides
Atu3251: Atu3251 - haloacid dehalogenase, at 268,197 to 268,883
Atu3251
Atu3252: Atu3252 - GntR family transcriptional regulator, at 269,049 to 269,765
Atu3252
Atu3253: Atu3253 - ABC transporter substrate binding protein, at 269,828 to 270,802
Atu3253
Atu3254: Atu3254 - dicarboxylate ABC transporter ATPase, at 270,863 to 271,435
Atu3254
Atu3255: Atu3255 - dicarboxylate ABC transporter permease, at 271,503 to 272,846
Atu3255
Position (kb) 269
270
271 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 268.868 kb on - strand at 268.878 kb on + strand at 268.878 kb on + strand at 268.886 kb on - strand at 268.886 kb on - strand at 268.886 kb on - strand at 268.915 kb on + strand at 268.929 kb on + strand at 268.929 kb on + strand at 269.028 kb on + strand at 269.129 kb on + strand, within Atu3252 at 269.250 kb on + strand, within Atu3252 at 269.280 kb on + strand, within Atu3252 at 269.349 kb on + strand, within Atu3252 at 269.442 kb on + strand, within Atu3252 at 269.762 kb on - strand at 269.862 kb on - strand at 269.959 kb on + strand, within Atu3253 at 269.959 kb on + strand, within Atu3253 at 270.056 kb on - strand, within Atu3253 at 270.060 kb on + strand, within Atu3253 at 270.132 kb on + strand, within Atu3253 at 270.211 kb on + strand, within Atu3253 at 270.285 kb on + strand, within Atu3253 at 270.329 kb on - strand, within Atu3253 at 270.336 kb on + strand, within Atu3253 at 270.422 kb on + strand, within Atu3253 at 270.422 kb on - strand, within Atu3253 at 270.530 kb on - strand, within Atu3253 at 270.535 kb on + strand, within Atu3253 at 270.556 kb on + strand, within Atu3253 at 270.564 kb on - strand, within Atu3253 at 270.569 kb on - strand, within Atu3253 at 270.569 kb on - strand, within Atu3253 at 270.617 kb on + strand, within Atu3253 at 270.629 kb on + strand, within Atu3253 at 270.629 kb on + strand, within Atu3253 at 270.691 kb on - strand, within Atu3253 at 270.763 kb on + strand at 270.771 kb on - strand at 270.771 kb on - strand at 270.891 kb on + strand at 270.947 kb on + strand, within Atu3254 at 270.954 kb on - strand, within Atu3254 at 270.967 kb on + strand, within Atu3254 at 270.982 kb on + strand, within Atu3254 at 270.982 kb on + strand, within Atu3254 at 270.990 kb on - strand, within Atu3254 at 271.145 kb on - strand, within Atu3254 at 271.174 kb on + strand, within Atu3254 at 271.282 kb on - strand, within Atu3254 at 271.317 kb on - strand, within Atu3254 at 271.355 kb on + strand, within Atu3254 at 271.363 kb on - strand, within Atu3254 at 271.404 kb on + strand at 271.420 kb on - strand at 271.437 kb on - strand at 271.459 kb on - strand at 271.520 kb on + strand at 271.528 kb on - strand at 271.584 kb on + strand at 271.651 kb on + strand, within Atu3255 at 271.673 kb on - strand, within Atu3255 at 271.718 kb on + strand, within Atu3255 at 271.718 kb on + strand, within Atu3255 at 271.726 kb on - strand, within Atu3255 at 271.726 kb on - strand, within Atu3255 at 271.726 kb on - strand, within Atu3255 at 271.754 kb on + strand, within Atu3255 at 271.754 kb on + strand, within Atu3255 at 271.764 kb on + strand, within Atu3255
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_D10 remove 268,868 - -1.3 268,878 + +0.0 268,878 + -0.1 268,886 - +0.3 268,886 - -0.1 268,886 - -1.9 268,915 + -2.3 268,929 + +1.0 268,929 + -0.7 269,028 + +0.7 269,129 + Atu3252 0.11 +1.4 269,250 + Atu3252 0.28 +0.1 269,280 + Atu3252 0.32 -1.8 269,349 + Atu3252 0.42 -2.6 269,442 + Atu3252 0.55 -0.0 269,762 - -0.7 269,862 - -1.0 269,959 + Atu3253 0.13 -0.3 269,959 + Atu3253 0.13 +0.7 270,056 - Atu3253 0.23 -3.5 270,060 + Atu3253 0.24 +0.1 270,132 + Atu3253 0.31 -1.9 270,211 + Atu3253 0.39 +0.5 270,285 + Atu3253 0.47 +0.5 270,329 - Atu3253 0.51 +1.6 270,336 + Atu3253 0.52 +1.4 270,422 + Atu3253 0.61 -0.3 270,422 - Atu3253 0.61 -0.8 270,530 - Atu3253 0.72 +0.1 270,535 + Atu3253 0.73 +0.7 270,556 + Atu3253 0.75 +0.7 270,564 - Atu3253 0.75 +0.1 270,569 - Atu3253 0.76 -0.7 270,569 - Atu3253 0.76 -0.2 270,617 + Atu3253 0.81 -1.9 270,629 + Atu3253 0.82 -1.0 270,629 + Atu3253 0.82 +0.0 270,691 - Atu3253 0.89 -0.1 270,763 + +3.4 270,771 - -0.5 270,771 - -1.8 270,891 + +0.5 270,947 + Atu3254 0.15 -0.5 270,954 - Atu3254 0.16 -1.4 270,967 + Atu3254 0.18 -0.7 270,982 + Atu3254 0.21 -0.4 270,982 + Atu3254 0.21 -1.3 270,990 - Atu3254 0.22 -2.4 271,145 - Atu3254 0.49 +0.6 271,174 + Atu3254 0.54 -0.3 271,282 - Atu3254 0.73 -1.4 271,317 - Atu3254 0.79 +1.4 271,355 + Atu3254 0.86 -0.9 271,363 - Atu3254 0.87 -1.0 271,404 + +0.2 271,420 - +3.1 271,437 - -0.1 271,459 - -0.2 271,520 + -0.5 271,528 - -1.2 271,584 + +0.7 271,651 + Atu3255 0.11 +0.7 271,673 - Atu3255 0.13 +0.1 271,718 + Atu3255 0.16 -2.1 271,718 + Atu3255 0.16 -1.4 271,726 - Atu3255 0.17 -0.1 271,726 - Atu3255 0.17 +1.9 271,726 - Atu3255 0.17 +0.1 271,754 + Atu3255 0.19 -0.2 271,754 + Atu3255 0.19 -0.1 271,764 + Atu3255 0.19 +0.1
Or see this region's nucleotide sequence