Experiment: AgroPhage_D10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3168 and Atu3169 are separated by 12 nucleotides Atu3169 and Atu3170 are separated by 12 nucleotides Atu3170 and Atu3171 are separated by 10 nucleotides
Atu3168: Atu3168 - sorbitol/mannitol ABC transporter permease, at 178,224 to 179,096
Atu3168
Atu3169: Atu3169 - sorbitol/mannitol ABC transporter permease, at 179,109 to 179,933
Atu3169
Atu3170: Atu3170 - sorbitol/mannitol ABC transporter ATPase, at 179,946 to 180,944
Atu3170
Atu3171: Atu3171 - sugar ABC transporter ATPase, at 180,955 to 182,031
Atu3171
Position (kb) 179
180
181 Strain fitness (log2 ratio) -2
-1
0
1
2 at 179.213 kb on + strand, within Atu3169 at 179.221 kb on - strand, within Atu3169 at 179.451 kb on - strand, within Atu3169 at 179.650 kb on - strand, within Atu3169 at 179.811 kb on - strand, within Atu3169 at 179.839 kb on - strand, within Atu3169 at 179.839 kb on - strand, within Atu3169 at 179.979 kb on - strand at 180.205 kb on + strand, within Atu3170 at 180.253 kb on - strand, within Atu3170 at 180.260 kb on + strand, within Atu3170 at 180.292 kb on - strand, within Atu3170 at 180.363 kb on - strand, within Atu3170 at 180.399 kb on + strand, within Atu3170 at 180.407 kb on - strand, within Atu3170 at 180.428 kb on + strand, within Atu3170 at 180.457 kb on - strand, within Atu3170 at 180.488 kb on - strand, within Atu3170 at 180.527 kb on + strand, within Atu3170 at 180.527 kb on + strand, within Atu3170 at 180.535 kb on - strand, within Atu3170 at 180.535 kb on - strand, within Atu3170 at 180.663 kb on + strand, within Atu3170 at 180.767 kb on + strand, within Atu3170 at 180.807 kb on - strand, within Atu3170 at 180.884 kb on + strand at 180.900 kb on - strand at 180.953 kb on + strand at 180.961 kb on - strand at 181.083 kb on - strand, within Atu3171 at 181.107 kb on + strand, within Atu3171 at 181.179 kb on + strand, within Atu3171 at 181.222 kb on + strand, within Atu3171 at 181.392 kb on + strand, within Atu3171 at 181.398 kb on - strand, within Atu3171 at 181.450 kb on - strand, within Atu3171 at 181.452 kb on + strand, within Atu3171 at 181.458 kb on + strand, within Atu3171 at 181.543 kb on - strand, within Atu3171 at 181.667 kb on - strand, within Atu3171 at 181.742 kb on - strand, within Atu3171 at 181.769 kb on + strand, within Atu3171 at 181.820 kb on - strand, within Atu3171
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_D10 remove 179,213 + Atu3169 0.13 +0.0 179,221 - Atu3169 0.14 +0.7 179,451 - Atu3169 0.41 -0.5 179,650 - Atu3169 0.66 +0.0 179,811 - Atu3169 0.85 +0.4 179,839 - Atu3169 0.88 -0.1 179,839 - Atu3169 0.88 -0.3 179,979 - -1.1 180,205 + Atu3170 0.26 -0.3 180,253 - Atu3170 0.31 +0.3 180,260 + Atu3170 0.31 -1.5 180,292 - Atu3170 0.35 +2.0 180,363 - Atu3170 0.42 -1.6 180,399 + Atu3170 0.45 +0.4 180,407 - Atu3170 0.46 +1.9 180,428 + Atu3170 0.48 -1.8 180,457 - Atu3170 0.51 +1.2 180,488 - Atu3170 0.54 +0.4 180,527 + Atu3170 0.58 -0.4 180,527 + Atu3170 0.58 +0.3 180,535 - Atu3170 0.59 +0.3 180,535 - Atu3170 0.59 -0.6 180,663 + Atu3170 0.72 +0.3 180,767 + Atu3170 0.82 -1.1 180,807 - Atu3170 0.86 -1.4 180,884 + +1.5 180,900 - +0.5 180,953 + +0.4 180,961 - +1.5 181,083 - Atu3171 0.12 +0.0 181,107 + Atu3171 0.14 +1.2 181,179 + Atu3171 0.21 -1.0 181,222 + Atu3171 0.25 -0.5 181,392 + Atu3171 0.41 -0.4 181,398 - Atu3171 0.41 +0.0 181,450 - Atu3171 0.46 +1.5 181,452 + Atu3171 0.46 -2.3 181,458 + Atu3171 0.47 +0.3 181,543 - Atu3171 0.55 +0.5 181,667 - Atu3171 0.66 -1.8 181,742 - Atu3171 0.73 +0.0 181,769 + Atu3171 0.76 -0.8 181,820 - Atu3171 0.80 -0.6
Or see this region's nucleotide sequence